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Detailed information on CNT30149431


BLAST search results

BLAST vs Swiss-Prot:
sp|P22197|ALFC7_ARATH, E-value = 5e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675100Brachypodium distachyonSetaria viridis22.246.5288.79107forward
CNT30615958Brachypodium distachyonSesamum indicum24.4823.7483.05118forward
CNT30222288Brachypodium distachyonHordeum vulgare20.1222.9390.7297forward
CNT30552359Brachypodium distachyonOryza glaberrima40.4620.9789.74195forward
CNT30457732Brachypodium distachyonSaccharum spontaneum40.0414.4991.19193forward
CNT30135152Brachypodium distachyonLolium perenne45.8534.185.52221forward
CNT3014640Brachypodium distachyonZea mays33.245.3394.38160forward
CNT30650515Brachypodium distachyonRosa chinensis30.0818.4586.9145forward
CNT30717283Brachypodium distachyonMalus domestica golden30.0821.6484.83145forward
CNT30349462Brachypodium distachyonEragrostis tef40.2528.0391.75194forward
CNT30364112Brachypodium distachyonSorghum bicolor26.3514.4392.91127forward
CNT30154837Brachypodium distachyonPrunus persica32.1616.8182.58155forward
CNT30433772Brachypodium distachyonPapaver somniferum35.6812.2882.56172forward

Expression of CNT30149431

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MSTTINVMRSINKDLRLNNGHQTVLLADDGITSQTLSIQVNGKL*

Sequence

>CNT30149431
CTAGTCGATCGTTGATTCACCGCAAAACACAAGCTAAAAAGAGCAAAAGCTTACTGAACACACATCTACTCAGCATATAAAAGGTTTCACCATTGTAGCA
TAAAGCAGCAAAATTACAGGACGGTAGAACAAAAACCTGCTGCTCCAATTTACCATACGCAGCACCTGAATTACAGGGGATTCAGCACCAAAAACCTACT
AGGGTAACATGAAAGTTGCAAGTTGCATATTATTAAAAAGAGGTTCGATATCCGAAGATAGGACTCTGAAAACCAAACAATACTCATAGGCAGCAAGGAC
CACCTCCGTCACATGAGCACAACGATCAATGTCATGAGGTCCATCAACAAGGATCTCAGGCTCAACAATGGGCACCAGACCGTTCTCCTGGCAGATGATG
GCATAACGAGCCAGACCCTGAGCATTCAGGTCAATGGAAAGCTGTGATGGCTCATTGGGGCCAATCTTGAGGACTGCACGCC