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Detailed information on CNT30729011


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 5e-78

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690240Corchorus capsularisOryza sativa15.3531.486.41103forward
CNT30675100Corchorus capsularisSetaria viridis8.4924.7889.4757forward
CNT30522989Corchorus capsularisSetaria italica20.4214.7585.4137forward
CNT30641283Corchorus capsularisNymphaea colorata22.657.7681.58152forward
CNT30513666Corchorus capsularisJuglans regia27.1235.4181.87182forward
CNT30375244Corchorus capsularisArabidopsis thaliana23.5530.8683.54158forward
CNT30282161Corchorus capsularisChenopodium quinoa17.7321.2984.87119forward
CNT30636619Corchorus capsularisCapsicum annuum32.6428.1186.3219forward
CNT30222685Corchorus capsularisHordeum vulgare18.9343.282.68127forward
CNT30564032Corchorus capsularisActinidia chinensis17.2931.5285.34116forward
CNT3085859Corchorus capsularisVigna radiata24.1433.8284.57162forward
CNT30552124Corchorus capsularisOryza glaberrima27.5719.9881.62185forward
CNT30145974Corchorus capsularisMedicago truncatula13.7128.9382.6192forward
CNT3074945Corchorus capsularisBrassica juncea21.0115.1985.82141forward
CNT30458863Corchorus capsularisSaccharum spontaneum21.3110.2485.31143forward
CNT30135152Corchorus capsularisLolium perenne20.4221.1484.67137forward
CNT3015043Corchorus capsularisZea mays17.5924.0881.36118forward
CNT30609114Corchorus capsularisGossypium raimondii24.8925.7786.83167forward
CNT30625244Corchorus capsularisDaucus carota21.3121.7383.22143forward
CNT30720854Corchorus capsularisTriticum spelta26.6826.3681.56179forward
CNT30364112Corchorus capsularisSorghum bicolor20.5715.6883.33138forward
CNT30622084Corchorus capsularisCajanus cajan25.3422.8884.71170forward
CNT30154837Corchorus capsularisPrunus persica31.7423.183.1213forward
CNT30433772Corchorus capsularisPapaver somniferum32.4915.5679.82218forward
CNT3026774Corchorus capsularisPopulus trichocarpa23.418.9485.99157forward
CNT30120586Corchorus capsularisCitrus clementina13.2626.6589.8989forward
CNT3036222Corchorus capsularisCucumis melo25.9347.5482.18174forward
CNT30113854Corchorus capsularisFicus carica24.8923.5580.24167forward
CNT30724801Corchorus capsularisLupinus angustifolius26.5314.2281.46178forward

Expression of CNT30729011

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MEAFSGTLTKLSITLVGTKSGLRVSLAPNKECLLGFLHILCLSTPGLECALLKGTDSVLGNNLRGNLW*

Sequence

>CNT30729011
CTCCATTATAAAAAGCAGAGAATATTGTTTTTAAACTGAAAATAAACAAAACATGTCCAAACTCAGACGAGCCACTAAGGGCTCCCCAAGCTTATTAAGT
CTGATTTTCACCCTCTAAATTCCATGAGAAACGACACAAACCCAAAAAGGAAAAAAGTTCTAAAAGCCTAAAAATATTCATACCGCAATGTACTCTGCAA
AATAGACATTAAAAAGAGACCACAAAAGCCTATCTTCTTAGTATTTGTAGTCCTTGACATGGAGGCTTTCAGCGGCACCCTCACCAAGCTTAGCATCACC
CTTGTAGGTACCAAGAGTGGCCTCAGAGTTAGCCTTGCACCTAACAAGGAATGCCTCTTGGGCTTTCTTCACATTCTCTGCCTTTCCACCCCAGGCCTTG
AGTGTGCTCTGTTGAAGGGCACGGACAGTGTACTCGGCAATAACCTCAGGGGCAACCTTTGGTGAATCAGAACCAGGGGTAACCATGTTAGGCTTCAATA
GGGTACCCTCAAGCATGACATGGTGGTCATTGAGAGCCTTGTAACAGGCAGCAAGGACGCGCTCTGTAACCTCAGCACATTTCTTGATGTCATGTGATCC
ATCAACAAGGATTTCGGGTTCAACAATTGGGACAAGTCCACATTGTTGGCAGATAGCAGCATACATGGCTA