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Detailed information on CNT30717283


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 3e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671250Malus domestica goldenSetaria viridis9.726.7586.1565forward
CNT30513666Malus domestica goldenJuglans regia68.8189.6982.43461forward
CNT30375244Malus domestica goldenArabidopsis thaliana23.1330.2783.23155forward
CNT30615958Malus domestica goldenSesamum indicum27.4637.0280.98184forward
CNT3021292Malus domestica goldenCitrullus lanatus20.920.8380.71140forward
CNT30493761Malus domestica goldenOlea europaea12.0930.3486.4281forward
CNT30158302Malus domestica goldenPistacia vera14.4822.382.4797forward
CNT30636619Malus domestica goldenCapsicum annuum46.8740.3180.57314forward
CNT30222288Malus domestica goldenHordeum vulgare29.446.5781.73197forward
CNT3085829Malus domestica goldenVigna radiata27.9150.1383.42187forward
CNT30552359Malus domestica goldenOryza glaberrima48.2134.7379.57323forward
CNT30145818Malus domestica goldenMedicago truncatula31.4920.7981.04211forward
CNT3061869Malus domestica goldenArabidopsis lyrata26.2728.6281.25176forward
CNT30457732Malus domestica goldenSaccharum spontaneum26.2713.2182.95176forward
CNT304578Malus domestica goldenZea mays26.2731.8881.82176forward
CNT30650515Malus domestica goldenRosa chinensis65.3755.7388.13438forward
CNT30625244Malus domestica goldenDaucus carota46.7247.5782.75313forward
CNT30349462Malus domestica goldenEragrostis tef26.2725.4382.95176forward
CNT30479170Malus domestica goldenArabidopsis halleri33.5853.1980.89225forward
CNT30364112Malus domestica goldenSorghum bicolor30.623.380.49205forward
CNT30154837Malus domestica goldenPrunus persica67.0148.785.97449forward
CNT30433772Malus domestica goldenPapaver somniferum47.3122.6381.39317forward
CNT30643281Malus domestica goldenCannabis sativa39.5568.4884.53265forward
CNT3026774Malus domestica goldenPopulus trichocarpa48.9639.5780.79328forward
CNT30120586Malus domestica goldenCitrus clementina33.5867.3782.67225forward
CNT3036222Malus domestica goldenCucumis melo17.0131.1585.09114forward
CNT30149431Malus domestica goldenBrachypodium distachyon21.6430.0884.83145forward
CNT30113854Malus domestica goldenFicus carica36.1234.1383.88242forward
CNT30724887Malus domestica goldenLupinus angustifolius42.2421.2580.57283forward

Expression of CNT30717283

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VEGSLLLTLSTGQEHNSRDSCWGSAQQGANCVLSNHFW*

>peptide 2 (68 aa)
LRVASSSLCPPDKNTTAGTAAGVVRNKARTVYLAITSGETFLASDPGVTMLGFKRVPSSRTWWSLRAL*

>peptide 3 (36 aa)
MRQEHVQSHRHTYRWNGVHRPGSLAQRWALGHSPGR*

>peptide 4 (38 aa)
MVVVKGLVACGKNTFSHIGTLIDGMGSIDQDLWLNDGH*

Sequence

>CNT30717283
GTTGAGGGTAGCCTCCTCCTCACTCTGTCCACCGGACAAGAACACAACAGCAGGGACAGCTGCTGGGGTAGTGCGCAACAAGGCGCGAACTGTGTACTTA
GCAATCACTTCTGGTGAAACCTTCTTGGCATCAGATCCTGGGGTAACCATGTTGGGTTTCAAGAGAGTTCCTTCAAGCAGGACATGGTGGTCGTTAAGGG
CCTTGTAGCATGCGGCAAGAACACGTTCAGTCACATCGGCACACTTATCGATGGAATGGGGTCCATCGACCAGGATCTCTGGCTCAACGATGGGCACTAG
GCCATTCTCCTGGCAGATGATGGCATAACGAGCCAACCCGTTGGCATTCTCTTGGATGGACAGCTGAGATGGTTCATTGGGGCCAATCTTGAGCACAGCA
CGCCACTTTGCGAACCGTGCACCAGCTTCATAGTACTTCTGGCAACGCTGGGCAAGGCCATTCTCCTGGCAGATGATAGCATATCGGGCCAACCCATTGG
CGTTCTCGTTGATTGCCAGCTGAGATGGCTCGGTGGGGCCAATCTTGAGCACAGCACGCCATTTTGCAAATCGGGCACCAGCTTCGTAGTACTTCTTGCA
ACGTTCGCCAAGGCCATCCAGACCCTGAGTTGTGGTTTCACCATTGGTACCAGCAAGCTCAACAGTGCCC