Detailed information on CNT30580631


BLAST search results

BLAST vs Swiss-Prot:
sp|P08440|ALF_MAIZE, E-value = 6e-70

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30145818Echinochloa crusgalliMedicago truncatula30.79.9584.16101forward
CNT30457732Echinochloa crusgalliSaccharum spontaneum10024.793.62329forward
CNT30683148Echinochloa crusgalliTriticum urartu63.2238.5992.31208forward
CNT30349462Echinochloa crusgalliEragrostis tef34.6516.4789.47114forward
CNT30479170Echinochloa crusgalliArabidopsis halleri28.8822.4685.2695forward
CNT30355098Echinochloa crusgalliLactuca sativa29.7926.4984.6998forward
CNT30433772Echinochloa crusgalliPapaver somniferum62.6114.782.04206forward
CNT3026858Echinochloa crusgalliPopulus trichocarpa25.8413.1685.8885forward

Expression of CNT30580631

Peptides detected in this lncRNA

>peptide 1 (39 aa)
VVSLSVPTTSMVPLSTLIPGRTPPSLRTSTKGLPSLVFW*

>peptide 2 (77 aa)
GLLVSANNLNGALVDLDPREDTSFVEDIDEGLAVLGLLVESLLEEDHTTEVREGTRAAEEELTEGTAVLLHILNVDA*

Sequence

>CNT30580631
GTGGTCTCCTTGTCAGTGCCAACAACCTCAATGGTGCCCTTGTCGACCTTGATCCCAGGGAGGACACCTCCTTCGTTGAGGACATCGACGAAGGGCTTGC
CGTCCTTGGTCTTCTGGTAGAGAGTCTCCTCGAAGAGGATCACACCACTGAGGTACGGGAGGGCACCAGGGCAGCAGAAGAGGAGCTCACGGAGGGCACG
GCGGTTCTCCTCCACATTCTCAACGTTGATGCTTGAAAGGCGCTTGCCAATGGTGCCAGTGGACTCATCAGCAGCGAGGATACCCTTGCCAGGGGTGCCA
ATGTAGGCAGCATTCTTGATGAGCTCATC