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Detailed information on CNT30687113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSTUT001430, E-value = 8e-30

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Triticum urartuEucalyptus grandis59.5953.5580.44317forward
CNT30500604Triticum urartuCoffea canephora63.5354.9680.47338forward
CNT30616482Triticum urartuSesamum indicum53.5718.6980.35285forward
CNT30727661Triticum urartuCorchorus capsularis44.9238.1880.75239forward
CNT30379051Triticum urartuManihot esculenta62.5947.7180.78333forward
CNT30506120Triticum urartuNicotiana attenuata43.839.8381.55233forward
CNT3091613Triticum urartuSolanum tuberosum76.553.8479.12407forward
CNT3088022Triticum urartuVigna radiata53.5765.9780.35285forward
CNT30234460Triticum urartuBrassica oleracea63.5348.0881.66338forward
CNT3076593Triticum urartuBrassica juncea60.1558.6181.56320forward
CNT30205370Triticum urartuHelianthus annuus71.9958.6579.11383forward
CNT30620243Triticum urartuCajanus cajan33.6553.9284.92179forward
CNT30354836Triticum urartuLactuca sativa48.8745.0681.15260forward
CNT30154770Triticum urartuPrunus persica56.285.1981.61299forward
CNT30574166Triticum urartuVitis vinifera74.8192.7779.15398forward
CNT30705868Triticum urartuPrunus avium64.132.1179.47341forward
CNT30109704Triticum urartuOryza longistaminata44.3642.4586.44236forward
CNT30121049Triticum urartuCitrus clementina56.227.6380.6299forward
CNT30103220Triticum urartuOryza rufipogon97.9356.0885.6521forward
CNT30584450Triticum urartuEchinochloa crusgalli90.7964.4984.89483forward
CNT30558075Triticum urartuPanicum hallii48.3132.5787.16257forward
CNT3049544Triticum urartuCucumis sativus5033.2181.58266forward

Expression of CNT30687113

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SSEKSDCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSVK*

>peptide 2 (36 aa)
MWGCSSGMLASMMDWSESMMDWSGCRKESQAYMMERW

>peptide 3 (78 aa)
MTGMSGCMRATWGCMRVMSGCMRAMLGCTREKWGCMMEMSGCMLARSDYKPVMLDYSSEMWGYSLVMLGCSSEMWGCS*

Sequence

>CNT30687113
GTAGTTCGGAGAAGTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTC
GGTGAAGTGGGGCTGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGACGGGGATGTCGGGCTGT
ATGAGGGCGACGTGGGGCTGTATGAGGGTGATGTCGGGCTGTATGAGGGCGATGTTGGGCTGTACGAGGGAGAAGTGGGGCTGTATGATGGAGATGTCGG
GCTGTATGCTGGCGAGGTCGGACTATAAACCGGTGATGTTGGACTATAGCTCGGAGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGAT
GTGGGGCTGTAGCTAGGAGATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGACTGGTCGGGCTGTAGGAAG
GAGAGCCAGGCGTATATGATGGAGAGGTGGGG