CANTATAdb - search

Detailed information on CNT30625703

BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 8e-87

BLAST vs NONCODE:
NONSLYT000794, E-value = 3e-34

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30616482	Daucus carota	Sesamum indicum	50.78	36.13	80.76	551	forward
CNT30379142	Daucus carota	Manihot esculenta	45.71	53.1	78.83	496	forward
CNT30489068	Daucus carota	Olea europaea	34.56	75.91	79.47	375	forward
CNT30468525	Daucus carota	Saccharum spontaneum	28.39	36.54	81.49	308	forward
CNT30350937	Daucus carota	Eragrostis tef	28.11	55.15	80.33	305	forward
CNT30620207	Daucus carota	Cajanus cajan	48.29	24.38	78.44	524	forward
CNT30120999	Daucus carota	Citrus clementina	40.37	32.64	81.28	438	forward

Expression of CNT30625703

Peptides detected in this lncRNA

>peptide 1 (40 aa)
LACNWGMSDCTGWMVIVLDCSGNMPGRGCTLQMKGCSLEM*

>peptide 2 (37 aa)
MIWGARDWRPGWSHAKVQTVHVTRKLNVNSLFQHLLI*

>peptide 3 (74 aa)
MMEKLDCMKVRLGCMMGRLDCRMGRLGCRTGSSGCRTERSGCRMERWGCRTERWGCKQVRWGCRQVRWGCSWGR*

>peptide 4 (63 aa)
MLVSWGYNQVKQGYTQERRGCTQERQGCTQERRGCTQVKRGYNLEKMQEKIPCHQHREKIVHQ*

Sequence

>CNT30625703
TCTTGCCTGTAACTGGGGGATGTCGGACTGTACGGGCTGGATGGTGATAGTCTTGGACTGCTCGGGGAATATGCCAGGGAGGGGCTGTACTTTGCAGATG
AAGGGTTGTAGCTTGGAGATGTAGGACTATAGCTTGGAGATGTGGGACTGTAGCTCGGCGATGTGGGACTGTATGCAGGAGAAGTAGGACTATATGATGG
AGAAGTTGGACTGTATGAAGGTGAGGTTGGGCTGTATGATGGGGAGGTTGGACTGTAGGATGGGGAGGTTGGGCTGTAGGACGGGGAGCTCGGGCTGTAG
GACGGAGAGGTCGGGCTGTAGGATGGAGAGGTGGGGCTGTAGGACGGAGAGGTGGGGCTGTAAGCAGGTGAGGTGGGGCTGTAGGCAGGTGAGGTGGGGC
TGTAGCTGGGGGAGGTAGGGGAGTAGGATGGACTTGTCGGTGAATATGTAGGGCTACTAGGACTATATCCTGGAGAGCTTGGACTATATGTTGGTGAGCT
GGGGCTATAACCAGGTGAAGCAGGGCTATACCCAGGAGAGGCGGGGCTGTACCCAGGAGAGGCAGGGCTGTACCCAGGAGAGGAGGGGCTGTACCCAGGT
GAAGAGGGGCTATAACTTGGAGAAGATGCAGGAGAAAATCCCATGCCACCAACATAGGGAGAAAATTGTGCATCAGTAATGGGTGACAGCCGAAGGTTTG
GGCTTAGCATGTAGTTTGGTGACATCATTCCATCATGATATGGGGTGCCCGAGATTGGCGACCGGGCTGGAGTCATGCCAAAGTCCAGACCGTCCATGTA
ACTAGGAAGCTGAATGTCAATAGCTTGTTTCAACATCTTCTCATTTAAATACAAAGAACAGTCTCCAGTGCCAATTGGTGCCAGTTGACCCAACATGATA
TTTTCAGTAACACCTCTCAGGTAATCTGTTTCTGCATAAACTGCAGCATCAAGGAGAATGTCAACTGTTTCCTCAAATGAACATCTCATCATTGGACCTG
TGTCATTCCTATTAATTCCATGACGAGTGATGGCCATCAGGTGACCACGGTATGTCATGGTATCGCAGAGGATAGCCAAGTGCCT