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Detailed information on CNT30149986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Brachypodium distachyonNymphaea colorata24.4128.9380.82219forward
CNT30700558Brachypodium distachyonQuercus lobata22.1973.782.41199forward
CNT30616482Brachypodium distachyonSesamum indicum42.8125.1880.47384forward
CNT30269263Brachypodium distachyonChenopodium quinoa48.1656.6981.48432forward
CNT3021339Brachypodium distachyonCitrullus lanatus42.4760.0979.27381forward
CNT30403468Brachypodium distachyonBeta vulgaris25.7529.8482.68231forward
CNT30524942Brachypodium distachyonPhaseolus vulgaris30.8841.2880.51277forward
CNT30628927Brachypodium distachyonVigna unguiculata29.6547.580.45266forward
CNT30710529Brachypodium distachyonGlycine max35.0155.6780.89314forward
CNT3091337Brachypodium distachyonSolanum tuberosum37.6841.4280.18338forward
CNT30400271Brachypodium distachyonTriticum turgidum51.3993.1390.24461forward
CNT30508904Brachypodium distachyonSolanum lycopersicum29.9943.5381.78269forward
CNT30554634Brachypodium distachyonOryza glaberrima85.492.6284.07766forward
CNT30145737Brachypodium distachyonMedicago truncatula34.345080.19308forward
CNT30607989Brachypodium distachyonGossypium raimondii31.3340.2682.92281forward
CNT3067990Brachypodium distachyonLeersia perrieri40.0294.2387.47359forward
CNT30341751Brachypodium distachyonEragrostis tef42.3678.5188.16380forward
CNT30366857Brachypodium distachyonSorghum bicolor68.2362.3283.66612forward
CNT30354603Brachypodium distachyonLactuca sativa37.6849.9382.25338forward
CNT30408809Brachypodium distachyonPapaver somniferum49.0550.9378.86440forward
CNT30573855Brachypodium distachyonVitis vinifera52.7378.5778.86473forward
CNT30642025Brachypodium distachyonCannabis sativa47.1682.4678.96423forward
CNT30103173Brachypodium distachyonOryza rufipogon85.478.8984.86766forward
CNT30497833Brachypodium distachyonDigitaria exilis69.7970.9885.3626forward
CNT30176441Brachypodium distachyonVigna angularis33.2249.2679.87298forward
CNT30558075Brachypodium distachyonPanicum hallii70.5780.2383.89633forward

Expression of CNT30149986

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MDCNHHQRMGCSLKGQVRMPCPQHMGRTEHLK*

>peptide 2 (43 aa)
CSLEKSDCMGSSSLGCLENKHVKGCTWPKKDCSSVKLDCSLAK*

>peptide 3 (29 aa)
MLGCIQAMSGCMQAMSGCTRAMSGCMMET*

>peptide 4 (85 aa)
MMAMSGCMMEMSGCMQEMLGCMLERSDYKLAMWDCSSEKWDYNLVMWDCSLAMWDCSLEMWGSMTDWLESTMDLLGSTTDLLGCS*

Sequence

>CNT30149986
CTGTAGTTTGGAGAAGTCTGACTGTATGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGGCTGTACTTGGCCGAAGAAGGATTGTAGC
TCGGTGAAGTTGGACTGTAGTTTGGCGAAGTAGGGCTGTAGCTCGGCGATGTTGGGCTGTATCCAGGCGATGTCGGGCTGTATGCAGGCGATGTCGGGCT
GTACGAGGGCGATGTCGGGCTGTATGATGGAGACGTAGGGCTGTATGAAGGAGACGTAGGGCTGTATGAAGGTGAAGTAGGGCTGTATGATGGCGATGTC
GGGCTGTATGATGGAGATGTCGGGCTGTATGCAGGAGATGTTGGGCTGTATGCTGGAGAGGTCGGACTATAAACTGGCGATGTGGGACTGTAGCTCGGAG
AAGTGGGACTATAACTTGGTGATGTGGGACTGTAGCTTGGCGATGTGGGACTGTAGCTTGGAGATGTGGGGGAGTATGACGGACTGGTTGGAGAGTACGA
TGGACTTGTTGGGGAGTACGACGGACTTGTTGGGCTGTAGCTAGGAGAGCCAGGCGTATATGATGGAGAAGTGGGACTATAGCTGGGTGATGCGGGACTA
TATGATGGAGAAGTCGGGCTGTATCCCTGTCCTGGCCCTGGACTGAAGACTGGAGAAGATGGACTGTAACCACCACCAGAGGATGGGCTGTAGCTTGAAG
GGACAGGTGAGAATGCCATGCCCCCAACATATGGGGAGAACTGAGCATCTGAAATAGGGGAAGACCTGAAATTAGGACTCAACATTGGTGACATCATTCC
TCCATCATGGTATGGTGTCCCAGAAGGCGAGGCACGCGCAGGTGTCATGCCAATATATTCTAAACCTTCAACATAGCTCGGGAGCTGAAGCTCAATG