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Detailed information on CNT30508793


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30616482Solanum lycopersicumSesamum indicum79.7920.283.44308forward
CNT30379091Solanum lycopersicumManihot esculenta56.2236.7884.79217forward
CNT30490955Solanum lycopersicumOlea europaea49.7451.6182.29192forward
CNT30648676Solanum lycopersicumRosa chinensis66.5834.583.66257forward
CNT30620207Solanum lycopersicumCajanus cajan61.6611.0780.67238forward
CNT30154791Solanum lycopersicumPrunus persica65.0332.382.87251forward
CNT30573937Solanum lycopersicumVitis vinifera78.7646.7782.24304forward
CNT30705866Solanum lycopersicumPrunus avium65.0333.6582.87251forward
CNT3027690Solanum lycopersicumTheobroma cacao33.1652.0382.81128forward
CNT30330867Solanum lycopersicumDioscorea rotundata33.9418.1286.26131forward

Expression of CNT30508793

Peptides detected in this lncRNA

>peptide 1 (47 aa)
AIAGRCWAVTRGAGAISGGSGAVTRRCGAITGGSGTVSWRGRAVTRG*

>peptide 2 (79 aa)
GYSWEMLGCNQGSWGYKWGKWGCNQEMWGYNRGKWDCILERSGCNQGMMGCNQGMMDCNQGMKWERKPCHPHTEKIEHL*

Sequence

>CNT30508793
GGGCTATAGCTGGGAGATGTTGGGCTGTAACCAGGGGAGCTGGGGCTATAAGTGGGGGAAGTGGGGCTGTAACCAGGAGATGTGGGGCTATAACCGGGGG
AAGTGGGACTGTATCCTGGAGAGGTCGGGCTGTAACCAGGGGATGATGGGCTGTAACCAGGGGATGATGGACTGTAACCAGGGGATGAAGTGGGAGAGAA
AGCCATGCCACCCACATACGGAGAAAATTGAGCATCTGTAATCGGTGACATCCGCATATTTGGGCTGAGCAAATAATTTGGAGACATCATTCCATCGTGA
TATGGGGTTCCACTGATAGGTGAACGTCCAGGTGTCATGCCAAATTCAAGACCACCTTCCATGTAGCTAGGTAATGGTATCTCAAT