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Detailed information on CNT30620207


BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Cajanus cajanNymphaea colorata10.830.6581.03232forward
CNT30315800Cajanus cajanCorylus avellana8.8941.5286.39191forward
CNT30549101Cajanus cajanIpomoea triloba8.3330.3482.12179forward
CNT30516897Cajanus cajanJuglans regia15.2236.9986.54327forward
CNT30376158Cajanus cajanArabidopsis thaliana11.8228.4183.07254forward
CNT30616482Cajanus cajanSesamum indicum23.9633.7780515forward
CNT30269270Cajanus cajanChenopodium quinoa15.3162.6780.85329forward
CNT30379142Cajanus cajanManihot esculenta22.5751.9382.68485forward
CNT30403782Cajanus cajanBeta vulgaris8.8945.6980.63191forward
CNT30524942Cajanus cajanPhaseolus vulgaris14.4746.3583.6311forward
CNT30628784Cajanus cajanVigna unguiculata7.5821.4293.87163forward
CNT30195835Cajanus cajanPisum sativum9.1777.5684.26197forward
CNT30490955Cajanus cajanOlea europaea10.4260.2279.46224forward
CNT30506120Cajanus cajanNicotiana attenuata11.2641.3783.06242forward
CNT30708121Cajanus cajanGlycine max8.6628.0194.09186forward
CNT3091192Cajanus cajanSolanum tuberosum16.8552.2480.11362forward
CNT30559586Cajanus cajanActinidia chinensis15.4541.1480.42332forward
CNT3087851Cajanus cajanVigna radiata15.7336.9892.9338forward
CNT30237809Cajanus cajanBrassica oleracea11.7745.5983.4253forward
CNT30508793Cajanus cajanSolanum lycopersicum11.0761.6680.67238forward
CNT30171519Cajanus cajanTrifolium pratense6.4240.5992.03138forward
CNT30145737Cajanus cajanMedicago truncatula6.723.3889.58144forward
CNT30256655Cajanus cajanAvena sativa8.3339.8783.24179forward
CNT30312132Cajanus cajanCamelina sativa25.7385.3480.29553forward
CNT30263540Cajanus cajanBrassica rapa10.9836.5981.78236forward
CNT3016767Cajanus cajanZea mays10.9831.2281.36236forward
CNT30606053Cajanus cajanGossypium raimondii15.8756.4685.92341forward
CNT3067979Cajanus cajanLeersia perrieri8.0548.0683.82173forward
CNT30625703Cajanus cajanDaucus carota24.3848.2978.44524forward
CNT30370935Cajanus cajanOryza glumipatula9.4520.9781.77203forward
CNT30154791Cajanus cajanPrunus persica10.9430.2482.98235forward
CNT30573925Cajanus cajanVitis vinifera16.2942.7981.71350forward
CNT30705862Cajanus cajanPrunus avium19.9240.382.71428forward
CNT30642003Cajanus cajanCannabis sativa16.9853.5281.92365forward
CNT3028162Cajanus cajanTheobroma cacao15.8760.7881.82341forward
CNT3051546Cajanus cajanAmborella trichopoda6.3828.4283.94137forward
CNT30120999Cajanus cajanCitrus clementina24.238.7584.04520forward
CNT30330867Cajanus cajanDioscorea rotundata15.546.0679.28333forward
CNT30176441Cajanus cajanVigna angularis13.0346.2883.21280forward

Expression of CNT30620207

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MTCNCHQMPPISHGITKNSQMSVIDIRSIKRNDNTQFIQKSSPNCLNTKNFNNLNQVVACGPGCINILMAHHS*

>peptide 2 (66 aa)
MTTRNSSRRARRTASIPRTSITSIKWLLVVLVASTSSWHITARRLTPSVSSIHSSLGLKPSFSSNF*

>peptide 3 (63 aa)
MEKLGYTMEMLGYMRVMLGCMRVMLGCIQETWGCMQEMWGYSWEMWDYSSVMWDCSSVMWDCS*

>peptide 4 (52 aa)
MVWSSRYWGASRSHAKVKTIHITRQLKFNSILQHLIIKIQGTFTGADWGKLT*

>peptide 5 (36 aa)
MSAILNFLSTIISRFSSIRSNQGEIFSRATSSSGIS*

>peptide 6 (29 aa)
MSAIPRKVISVSMLLSIFFKKTSSSADSS*

Sequence

>CNT30620207
ACTTGATGGAGACAATCTTGGACTGCTTGGAGAATATGCTAATGAAGGACTATACTTTGCTGACTGTGGATTGTAACTAGGGGAAGTAGGACTATACGAT
GGAGAAGTTGGGCTATACGATGGAGATGTTGGGCTATATGAGGGTGATGTTGGGCTGTATGAGGGTGATGTTGGGCTGTATCCAGGAGACGTGGGGCTGT
ATGCAGGAGATGTGGGGCTATAGCTGGGAGATGTGGGACTATAGCTCGGTGATGTGGGACTGTAGCTCGGTGATGTGGGACTGTAGCTAGGGGACGTGGG
AGAGTAGGATGGACTGGTAGGTGAATAGGCTGGACTTGTAGGACTGTATCCCGGAGAGCTGGGACTATAAGTTGGAGAGGTAGGGCTGTACCCAGGCGAT
GATGGACTATAGCCTGGAGATGATGGACTGTAACCAGGAGATGAAGTAGGAGAAAATGCCATCCCACCAACATAAGGTGAAAACTGGGCATCAGTAGTAG
GAGACAGACGTAAATTTGGGCTCAACAAATAACTGGGAGACATCAAGCCTTCATGGTATGGAGTTCCAGATATTGGGGAGCGAGCAGGAGTCATGCCAAA
GTCAAGACCATCCATATAACTAGGCAGTTGAAGTTCAATAGCATTCTTCAGCATCTCATCATTAAGATACAAGGCACATTCACCGGTGCCGATTGGGGCA
AGCTGACCTAACATTATGTTTTCAGTGACTCCCCTCAAATAATCAGTCTCAGCATATACAGCGGCATCAAGCAGAATATCAACCGTCTCTTCAAATGAGC
ATCTCATCATTGGCCCAGTATCATTCCGATTGATACCATGACGTGTAATTGCCATCAAATGCCCCCGATAAGTCATGGTATCACAAAGAATAGCCAAATG
TCTGTAATTGACATAAGATCCATCAAAAGAAATGACAACACGCAATTCATCCAGAAGAGCTCGCCGAACTGCCTCAATACCAAGAACTTCAATAACCTCA
ATCAAGTGGTTGCTTGTGGTCCTGGTTGCATCAACATCCTCATGGCACATCACAGCTAGAAGGTTGACACCTTCAGTATCAAGCATCCATTCCTCATTGG
GCTTAAAACCTTCATTCTCATCAAACTTCTGAGTTTTTGTATTTTTTATAAAAACCTTGTTGATGTCTGCGATACCTCGTAAGGTCATTTCAGTGAGCAT
GTTGCTTTCTATTTTCTTTAAGAAAACATCATCTTCTGCAGATTCATCCTGAATCTCACCTTTGGGTGCTTCATCATTCATAATACGTATACGAAGTATA
AGTTTTTCAGCATTGTCATCATTAAATATACAAGTCAAATCATCATCAAATTCAAGGTTAATCTTCTCCGCAATGTCAGCCATACTCAACTTCTTATCCA
CCATCATTTCACGATTTAGCTCAATCCGAAGCAACCAAGGTGAGATTTTTTCAAGAGCAACTTCTTCATCAGGCATTTCATAGTAAGACTTCACAAAATC
GACATCCTCTTCGATTATTGTACTCATCGGGTCCGGATCATACCACACCTCTGTAGCTTGAGTCACACTCCTGAGAGTGGTATATTCTAAAGCACACTGA
ACACTCTTGGCTCTCTCTTTAGTCTTGCCAACTTCAGGATTCAAGAAGACAGACAAAGAAGGTGTTTTAATTCTCTTTGCCACATTAATGATTTCCCTTA
ACCTAGGAACACCAAGAGTAACATTCTTTGCACTGACACCAGCATAATGGAAAGTGTTGAGAGTCATCTGAGTAGCAGGTTCACCAATTGATTGTGCTGC
CACACAACCAATCATTTCTCCAGAGGCTACAAGCGACTGCAAGAACCTTGATTCTATTTCTCCCACTACCCATTCAAATGCCTCACGAGAAAGCCTGTAT
TCCTCCAAGACCCTTTTACTGGCAAAAGTGCTGCGGAGCAAAATATTGAACAGGAGAGTAGCATTCTTCTGTGCTTCTTGACTCAAGAGATCTTCACCAG
GAACAACCTTAAGCCGCTCCTGGAGCTTATCAATGGCTTCCACAATTTCCATGGGATGCATATCAGAAGGCCTTCGAAAGTCAACCTTAAATGTCTTCTG
AGCATTCCAGATAAGCCTCTTCAGGTTAACAGGTAGTGGCAGAGAACTG