Detailed information on CNT30708216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000067, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Glycine maxNymphaea colorata82.4760.980.48461forward
CNT30536082Glycine maxEucalyptus grandis45.9743.4181.71257forward
CNT30316118Glycine maxCorylus avellana97.3276.1981.99544forward
CNT30549269Glycine maxIpomoea triloba63.1565.6179.89353forward
CNT30516897Glycine maxJuglans regia99.6463.0182.23557forward
CNT30377104Glycine maxArabidopsis thaliana88.9170.480.48497forward
CNT30500604Glycine maxCoffea canephora74.9668.1380.43419forward
CNT30616460Glycine maxSesamum indicum88.0134.2979.88492forward
CNT30269286Glycine maxChenopodium quinoa62.6153.2781.71350forward
CNT3021339Glycine maxCitrullus lanatus80.3270.8280.62449forward
CNT30378908Glycine maxManihot esculenta46.5127.5482.69260forward
CNT30403407Glycine maxBeta vulgaris28.839.8585.71161forward
CNT3087851Glycine maxVigna radiata100.1861.2786.79560forward
CNT30235097Glycine maxBrassica oleracea91.0663.5580.55509forward
CNT30312432Glycine maxCamelina sativa6187.6682.4341forward
CNT3076593Glycine maxBrassica juncea91.0693.2279.76509forward
CNT30263459Glycine maxBrassica rapa71.273.5780.65398forward
CNT30350936Glycine maxEragrostis tef56.1769.0180.57314forward
CNT30476941Glycine maxArabidopsis halleri86.7660.5581.24485forward
CNT30366537Glycine maxSorghum bicolor35.2422.5985.28197forward
CNT30154777Glycine maxPrunus persica80.8656.584.07452forward
CNT30408809Glycine maxPapaver somniferum66.0142.7182.38369forward
CNT3028162Glycine maxTheobroma cacao78.3578.0781.28438forward
CNT30498009Glycine maxDigitaria exilis53.4930.5481.27299forward

Expression of CNT30708216

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWDCSWVMWGCSSVMWESRMDWWANKLDL*

Sequence

>CNT30708216
GGGCTGTATCCAGGTGATGTGGGGCTGTAAGCAGGTGATGTAGGACTATATGATGGAGACGTCGGACTGTAAGAGGGTGATGTAGGGCTGTAGGAAGGTG
AAGTCGGACTATAGGAAGGAGATGTGGGGCTATATGCTGGTGAAGTAGGGCTGTAAGCAGGTGAAGTGGGGCTGTAAGCTGGTGAAGTTGGGCTATAGCT
GGGAGAGGTAGGGCTGTAGCTGGGTGATGTGGGACTGTAGCTGGGTGATGTGGGGCTGTAGCTCGGTGATGTGGGAGAGTAGGATGGACTGGTGGGCGAA
TAAGCTGGACTTGTAGGACTATATCCCGGAGAGCTAGGACTATAAGTCGGAGAGGTGGGGCTGTACCCGGGTGAAGTGGGGCTGTACCCAGGTGAAGTGG
GGCTGTACCCGGGTGATGAGGGACTATAGCCTGGGGATGATGGGCTGTAACCAGGAGATGAAGTAGGAGAAAATGCCATCCCACCAACATAAGGTGAAAA
CTGTGCATCAGTAGTTGGAGACAGCCGTAAATTGGGGCTCAACAAATAACTGGGAGACA