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Detailed information on CNT3049544


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 7e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640872Cucumis sativusNymphaea colorata56.4359.7182.96452forward
CNT30536042Cucumis sativusEucalyptus grandis43.763.6482.29350forward
CNT30700558Cucumis sativusQuercus lobata26.3478.1583.89211forward
CNT3021339Cucumis sativusCitrullus lanatus84.39106.6287.43676forward
CNT30379091Cucumis sativusManihot esculenta45.5761.8683.29365forward
CNT30524942Cucumis sativusPhaseolus vulgaris56.0566.9281.29449forward
CNT30628702Cucumis sativusVigna unguiculata58.368.1881.37467forward
CNT30489004Cucumis sativusOlea europaea31.2140.7284250forward
CNT30710467Cucumis sativusGlycine max65.4272.4879.77524forward
CNT30304911Cucumis sativusTriticum aestivum47.0763.0480.11377forward
CNT30399358Cucumis sativusTriticum turgidum47.0764.8979.84377forward
CNT30234460Cucumis sativusBrassica oleracea50.4457.4783.66404forward
CNT30554580Cucumis sativusOryza glaberrima36.9543.5381.42296forward
CNT3076593Cucumis sativusBrassica juncea58.385.5382.44467forward
CNT30263540Cucumis sativusBrassica rapa50.4462.6483.42404forward
CNT30216750Cucumis sativusKalanchoe fedtschenkoi38.262.4580.07306forward
CNT30648676Cucumis sativusRosa chinensis66.1771.1485.09530forward
CNT30713436Cucumis sativusMalus domestica golden17.4843.4890.71140forward
CNT30687113Cucumis sativusTriticum urartu33.215081.58266forward
CNT30596736Cucumis sativusOryza meridionalis36.9539.2180.41296forward
CNT30330871Cucumis sativusDioscorea rotundata30.9634.381.45248forward
CNT30149777Cucumis sativusBrachypodium distachyon49.444378.79396forward
CNT30103173Cucumis sativusOryza rufipogon42.234.8179.88338forward
CNT30498009Cucumis sativusDigitaria exilis40.0732.7980.37321forward
CNT30558075Cucumis sativusPanicum hallii52.6853.4980.81422forward
CNT30335475Cucumis sativusCynara cardunculus47.0729.0280.11377forward

Expression of CNT3049544

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLERWGCTKVMWDCKTVMLGCRRVKLGCRRAKLGCRRGMLGCRRVKLGCRRVKLGCRRVKLGCMQVKWDCKQAKWGCNLGKWGCNLVMWGCN*

Sequence

>CNT3049544
CTGTAATTGGGCGAGGTTGGGCTATATGGACTTGAAGGAGACAACCGTGGACTACTGGGTAAGTACGCCTGTGATGGGCTGTATTTAGCTGATTGAGGAT
TATAACTAGGTGAGGTTGGACTATAGCTAGGAGAAGTGGGGCTATAGCTCGGTGACGTGGGACTATAGCCAGGGGAGGTGGGGCTATATGCTGGAGAGGT
GGGGCTGTACGAAGGTGATGTGGGACTGTAAGACGGTGATGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGCGAAGTTGGGCTGTAGGAGGGG
GATGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTAGGAGGGTGAAGTTGGGCTGTATGCAGGTGAAGTGGGACTGTAAG
CAGGCGAAGTGGGGCTGTAACTTGGGGAAGTGGGGCTGTAACTTGGTGATGTGGGGCTGTAACTAGGAGAGGTGGGGCTGTAACTTGGAGAGGTTGGGCT
GTAACTGGGAGAGGTGGGTGAATAAGATGGACTTGTAGGAGAATATGCAGGACTAGTTGGGCTATAGCCCGGCGAACTAGGACTGTAAGTTGGAGATGTA
GGACTGTAGCCTGGAGAGGTAGGGCTGTACCCTGGAGAAGTAGGACTATAACCAGGAGATGTGGGACTATAGCCAGGGGATGATGGACTGTAGCCCGGAG
ATGATGGGCTATAGCCTGGAGATGACGTAGGAGAGAATGCCATGCCTCCTACATAGGGTGAAAATTGAGCGTCGCTGATAGGTGACAGGCGGAGATTTGG
G