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Detailed information on CNT30263848


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Brassica rapaEucalyptus grandis97.8769.9380.68414forward
CNT30549166Brassica rapaIpomoea triloba64.340.4882.72272forward
CNT30269286Brassica rapaChenopodium quinoa98.5863.4780.82417forward
CNT30489027Brassica rapaOlea europaea65.2579.7781.16276forward
CNT30554721Brassica rapaOryza glaberrima72.132.6282.62305forward
CNT30145737Brassica rapaMedicago truncatula59.3440.7583.67251forward
CNT30443444Brassica rapaAegilops tauschii42.3219.2382.68179forward
CNT30141877Brassica rapaLolium perenne63.5960.0481.78269forward
CNT3016767Brassica rapaZea mays68.5638.3680.69290forward
CNT3067990Brassica rapaLeersia perrieri50.8356.4384.19215forward
CNT30713436Brassica rapaMalus domestica golden66.4387.2780.07281forward
CNT30625547Brassica rapaDaucus carota8735.4579.89368forward
CNT30350936Brassica rapaEragrostis tef67.8563.0882.23287forward
CNT30366505Brassica rapaSorghum bicolor52.9635.4481.7224forward
CNT30596736Brassica rapaOryza meridionalis50.8328.4884.19215forward
CNT30354818Brassica rapaLactuca sativa51.7741.8782.19219forward
CNT30370935Brassica rapaOryza glumipatula50.8322.2184.19215forward
CNT30410012Brassica rapaPapaver somniferum87.9497.8980.38372forward
CNT3027877Brassica rapaTheobroma cacao54.3758.2382.17230forward
CNT30109704Brassica rapaOryza longistaminata50.8338.6784.19215forward
CNT30330867Brassica rapaDioscorea rotundata52.9630.9880.8224forward
CNT30584443Brassica rapaEchinochloa crusgalli55.0833.6281.97233forward
CNT30498009Brassica rapaDigitaria exilis76.3632.9980.8323forward
CNT30551544Brassica rapaOryza brachyantha67.8541.2981.88287forward
CNT30335477Brassica rapaCynara cardunculus50.1255.7981.13212forward

Expression of CNT30263848

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MQVTLGCMQEKLDCKQVKLDCNSGMLGCSLETLDCSLETLGYS

Sequence

>CNT30263848
CTGTAGTTTGGAGATGTAGGACTGTAAGGGCTAGCTGGTGATAGTCTTGCATTGCTAGGGGAGTAAGCCAGAGATGGACTGTATTTAGCAGACTGAGGGT
TGTAGCTTGGAGACGTCGGACCGTAACTAGGAGACGTTGGACTGTAGCTTGGAGATGTAGGGCTGTACCCAGGAGATGTAGGGCTGTATGCAGGAGATGT
TGGACTGTAGGAGGGTGAAGTAGGGCTGTAAGAAGGCGATGTCGGACTGTAAGATGGTGAAGTTGGACTGTAAGATGGAGAGGTAGGGCTGTATGCAGGT
GACGTTGGGCTGTATGCAGGAGAAGTTGGACTGTAAGCAGGTGAAGTTGGACTGTAACTCGGGGATGTTGGGCTGTAGCTTGGAGACGTTGGACTGTAGC
TTGGAGACGTTGGGCTATAGCTA