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Detailed information on CNT30642025


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 6e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523536Cannabis sativaSetaria italica51.0746.3780.53262forward
CNT30316118Cannabis sativaCorylus avellana65.8947.3484.32338forward
CNT30700558Cannabis sativaQuercus lobata51.2797.4184.79263forward
CNT30269263Cannabis sativaChenopodium quinoa92.7962.4778.57476forward
CNT30727661Cannabis sativaCorchorus capsularis77.5863.5884.17398forward
CNT30379051Cannabis sativaManihot esculenta75.8355.7381.23389forward
CNT30628927Cannabis sativaVigna unguiculata63.5558.2180.06326forward
CNT3091337Cannabis sativaSolanum tuberosum64.7240.6981.93332forward
CNT3088022Cannabis sativaVigna radiata51.2760.8881.37263forward
CNT30234460Cannabis sativaBrassica oleracea60.0443.8184.42308forward
CNT30508722Cannabis sativaSolanum lycopersicum64.7264.7281.33332forward
CNT30554721Cannabis sativaOryza glaberrima50.6827.8181.92260forward
CNT30145737Cannabis sativaMedicago truncatula73.8861.5379.16379forward
CNT3076593Cannabis sativaBrassica juncea60.0456.4183.77308forward
CNT30263540Cannabis sativaBrassica rapa60.0447.7583.77308forward
CNT30468674Cannabis sativaSaccharum spontaneum62.9635.2281.11323forward
CNT3016767Cannabis sativaZea mays81.6855.4279.47419forward
CNT3067990Cannabis sativaLeersia perrieri48.3465.0980.65248forward
CNT30205386Cannabis sativaHelianthus annuus56.5340.5683.1290forward
CNT30350935Cannabis sativaEragrostis tef55.3638.1782.39284forward
CNT30366857Cannabis sativaSorghum bicolor67.0635.0380.81344forward
CNT30596736Cannabis sativaOryza meridionalis40.7427.6882.3209forward
CNT30154777Cannabis sativaPrunus persica92.5959.3883.79475forward
CNT3051546Cannabis sativaAmborella trichopoda42.545.2382.57218forward
CNT30121168Cannabis sativaCitrus clementina87.5242.2883.52449forward
CNT30149986Cannabis sativaBrachypodium distachyon82.4647.1678.96423forward
CNT30498009Cannabis sativaDigitaria exilis77.1940.4579.55396forward
CNT30558075Cannabis sativaPanicum hallii77.1950.1980.3396forward
CNT30551544Cannabis sativaOryza brachyantha69.0150.9480.23354forward

Expression of CNT30642025

Peptides detected in this lncRNA

>peptide 1 (67 aa)
DYKDWLVATLDCLENKPMMDCILLIEDCNLEMLDYNLVRLGCNLARLDYNQEKLDCRLVKLDYRTEM*

>peptide 2 (57 aa)
MWDCKMGRLGCMLGRWDCKQGKLGCKQVRSDCNLVRLDCNLEMLDCNWVKLDCNLEK*

Sequence

>CNT30642025
GGACTATAAGGACTGGCTGGTGGCAACCCTCGACTGCTTGGAGAATAAGCCAATGATGGACTGTATTTTGCTGATTGAGGATTGTAACTTGGAGATGTTG
GACTATAACTTGGTGAGGTTGGGCTGTAACTTGGCGAGGTTGGACTATAACCAGGAGAAGTTGGACTGTAGGCTGGTGAAGTTGGACTATAGGACGGAGA
TGTAGGGCTGTAGGATGGTGATGTTGGGCTGTAGGAAGGTGATGTAGGGCTGTAAGAAGGGGATGTGGGACTGTAAGATGGGGAGGTTGGGCTGTATGCT
GGGGAGGTGGGACTGTAAGCAGGGGAAGTTGGGCTGTAAGCAGGTGAGGTCGGACTGTAACTTGGTGAGGTTGGACTGTAACTTGGAGATGTTGGACTGT
AACTGGGTGAAGTTGGACTGTAACTTGGAGAAGTAGGGCTATAGCTTGGTGATGTGGGTGAATAAGATGGACTTGTAGGAGAATAGGCAGGACTTGTTGG
ACTATAGCCCGGG