Detailed information on CNT3014113


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Zea maysOryza sativa23.775.492.79111forward
CNT30545709Zea maysIpomoea triloba29.9814.9984.29140forward
CNT30617519Zea maysSesamum indicum28.696.6787.31134forward
CNT30156599Zea maysPistacia vera30.6218.9788.11143forward
CNT3097357Zea maysSolanum tuberosum29.98783.57140forward
CNT30125031Zea maysPhyscomitrium patens20.9913.6984.6998forward
CNT30560106Zea maysActinidia chinensis29.9826.3285140forward
CNT3085845Zea maysVigna radiata25.919.2488.43121forward
CNT30146219Zea maysMedicago truncatula23.1343.5586.11108forward
CNT30216184Zea maysKalanchoe fedtschenkoi29.9828.8187.86140forward
CNT30204543Zea maysHelianthus annuus44.9795.8981.43210forward
CNT30625935Zea maysDaucus carota21.637.1184.16101forward
CNT30346128Zea maysEragrostis tef30.1923.5492.2141forward
CNT30367748Zea maysSorghum bicolor51.8262.2195.87242forward
CNT30104901Zea maysOryza longistaminata23.776.8692.79111forward
CNT30120491Zea maysCitrus clementina29.9839.4487.86140forward
CNT30149356Zea maysBrachypodium distachyon51.6110.3392.95241forward
CNT30101764Zea maysOryza rufipogon31.4827.3291.84147forward
CNT30576528Zea maysOryza barthii52.4636.6291.02245forward
CNT30175579Zea maysVigna angularis25.9120.988.43121forward

Expression of CNT3014113

Peptides detected in this lncRNA

>peptide 1 (83 aa)
SVSFSPRLVMTWRSSAAEMKPFWSLSKTRKASLSSSSESVSFIFLAISINLVDHVLQLCFSGVLAKGAHHSSKLLGSDAACSG*

>peptide 2 (52 aa)
VSQLLAEVGHDMAELSSRDETILVLVEDAKGLLKLLLGVGVLHLPCHQHQPR*

>peptide 3 (31 aa)
MSCSSASVGFWPRERITVPSSLVVMQPAAGE*

Sequence

>CNT3014113
CGTCAGTCAGCTTCTCGCCGAGGTTGGTCATGACATGGCGGAGCTCAGCAGCCGAGATGAAACCATTCTGGTCCTTGTCGAAGACGCGAAAGGCCTCCTT
AAGCTCCTCCTCGGAGTCGGTGTCCTTCATCTTCCTTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTCTGCTTCAGTGGGGTTCTGGCCAAG
GGAGCGCATCACAGTTCCAAGCTCCTTGGTAGTGATGCAGCCTGCAGCGGGTGAATAGATCAAACCTAAATTAGTATTGGAAGAACATACAATCTTCTCA
TCAAGGGGTACACATCAATATCACTGTTTCATTTCAAAGAAATACCAAATACAGTAACTTATCTGTGCTATAATATACACATTTTGAAGACTTCTTTATA
TAAATAACTACCATCGCAACAATACAGCACAGGTCATAATGTGGCAGTCATCTTCAGAAGCCTAAGG