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Detailed information on CNT30553743


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 2e-70

BLAST vs NONCODE:
NONSLYT003545, E-value = 5e-69

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Oryza glaberrimaSetaria viridis46.5765.2892.49346forward
CNT30545709Oryza glaberrimaIpomoea triloba41.5933.0883.17309forward
CNT30379145Oryza glaberrimaManihot esculenta36.8860.8984.67274forward
CNT30487977Oryza glaberrimaOlea europaea14.441.1586.92107forward
CNT30387589Oryza glaberrimaTriticum turgidum30.4210.8691.59226forward
CNT30586817Oryza glaberrimaMusa acuminata26.1119.4486.08194forward
CNT30234205Oryza glaberrimaBrassica oleracea26.1137.3889.18194forward
CNT30248464Oryza glaberrimaAvena sativa26.2432.0289.74195forward
CNT3073928Oryza glaberrimaBrassica juncea26.1144.2989.69194forward
CNT3011614Oryza glaberrimaZea mays27.3227.0393.1203forward
CNT30607166Oryza glaberrimaGossypium raimondii23.2847.486.71173forward
CNT30216184Oryza glaberrimaKalanchoe fedtschenkoi25.7139.385.86191forward
CNT30204543Oryza glaberrimaHelianthus annuus14.448.8683.18107forward
CNT30346128Oryza glaberrimaEragrostis tef43.3453.7688.51322forward
CNT30367748Oryza glaberrimaSorghum bicolor34.9966.8492.69260forward
CNT30621990Oryza glaberrimaCajanus cajan22.7525.5387.57169forward
CNT3026117Oryza glaberrimaPopulus trichocarpa16.5528.6781.3123forward
CNT3037982Oryza glaberrimaCucumis melo34.8646.9285.71259forward
CNT30332036Oryza glaberrimaDioscorea rotundata25.1759.3786.63187forward
CNT30149356Oryza glaberrimaBrachypodium distachyon31.910.1591.14237forward
CNT30576402Oryza glaberrimaOryza barthii99.8798.54100742forward
CNT30497675Oryza glaberrimaDigitaria exilis26.2432.7291.79195forward
CNT30116198Oryza glaberrimaOryza nivara28.9416.2990.7215forward
CNT30335796Oryza glaberrimaCynara cardunculus22.7542.4685.8169forward

Expression of CNT30553743

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MTWRSSAAEMKPFWSLSNTRKASLSSSSESVSFIFFAIRFRNSGKSMVPLPSASTSLIMSCSSASVGGVEASRRFRERRRGRKGNEWRGGGGEE

>peptide 2 (66 aa)
MRGKAATIQFSTQQGSKDDDRKEPGNAYLHNDPRKMMKPQQILCSGRRKISITIKRNQASDVVSHD*

>peptide 3 (35 aa)
CGGRLQPFNSARNREVKMMIERNQAMHICTTIQEK*

Sequence

>CNT30553743
ATGCGGGGGAAGGCTGCAACCATTCAATTCAGCACGCAACAGGGAAGTAAAGATGATGATAGAAAGGAACCAGGCAATGCATATCTGCACAACGATCCAA
GAAAAATGATGAAACCCCAACAAATCCTATGCTCCGGCAGGCGCAAGATAAGCATCACAATCAAAAGAAACCAGGCATCTGATGTTGTTTCGCATGACTA
GACCACCTAACCCGATCCCTACTCAACATTACCACCAGCAAAGATAGGTACTTAAAAGGAACATCACAAAGTACAGCTTTGTTGTAGGCCCTGACAGTTT
TAGTTCACTTCAGACAGAACTTATTTAATGGGAACCCTCCTCACTTGGCCATCATGACCTTAACGAACTCCTCGTAGTTGATCTGGCCATCGCCATCGAC
GTCAGCCTCACGGATCATCTCGTCAACTTCCTCGTCGGTCAGCTTCTCACCAAGGTTGGTCATGACGTGGCGGAGCTCAGCAGCCGAGATGAAACCGTTC
TGGTCCTTGTCAAACACACGGAAGGCCTCCTTGAGCTCCTCCTCAGAGTCGGTATCCTTCATCTTCTTCGCCATCAGGTTCAGGAACTCTGGGAAGTCAA
TGGTCCCATTGCCATCAGCATCAACCTCGTTGATCATGTCCTGCAGCTCCGCCTCAGTTGGGGGTGTGGAAGCTTCGAGAAGGTTCCGCGAGAGGAGGAG
AGGAAGGAAGGGGAACGAGTGGCGAGGTGGGGGTGGAGAAGAG