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Detailed information on CNT30524993


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 3e-27

BLAST vs NONCODE:
NONGMAT000837, E-value = 5e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674637Phaseolus vulgarisSetaria viridis11.1657.9288.28128forward
CNT30317789Phaseolus vulgarisCorylus avellana12.7371.9285.62146forward
CNT30547255Phaseolus vulgarisIpomoea triloba21.9748.4682.14252forward
CNT30377797Phaseolus vulgarisArabidopsis thaliana9.0741.1186.54104forward
CNT30277684Phaseolus vulgarisChenopodium quinoa31.340.0781.06359forward
CNT30727932Phaseolus vulgarisCorchorus capsularis29.9926.3883.14344forward
CNT30379731Phaseolus vulgarisManihot esculenta34.4435.5981.01395forward
CNT30196966Phaseolus vulgarisPisum sativum6.1929.5890.1471forward
CNT30710612Phaseolus vulgarisGlycine max31.334.7991.09359forward
CNT3042430Phaseolus vulgarisPrunus dulcis26.8528.2882.79308forward
CNT3091254Phaseolus vulgarisSolanum tuberosum20.8415.8280.75239forward
CNT30179447Phaseolus vulgarisSecale cereale20.423.3879.91234forward
CNT30287195Phaseolus vulgarisTriticum aestivum32.2641.7679.73370forward
CNT30221336Phaseolus vulgarisHordeum vulgare15.3425.4782.39176forward
CNT30385696Phaseolus vulgarisTriticum turgidum15.3443.4682.39176forward
CNT30567880Phaseolus vulgarisActinidia chinensis32.3516.2983.29371forward
CNT30592119Phaseolus vulgarisMusa acuminata16.1320.4982.7185forward
CNT30543261Phaseolus vulgarisBrassica napus31.3966.7980360forward
CNT30238377Phaseolus vulgarisBrassica oleracea21.7146.3783.13249forward
CNT30436022Phaseolus vulgarisAegilops tauschii32.2637.4979.73370forward
CNT30242448Phaseolus vulgarisAvena sativa18.4839.7782.08212forward
CNT30657734Phaseolus vulgarisTriticum dicoccoides32.2640.9379.73370forward
CNT30259787Phaseolus vulgarisBrassica rapa21.1944.5180.66243forward
CNT30614251Phaseolus vulgarisArabis alpina8.233.186.1794forward
CNT3010265Phaseolus vulgarisZea mays19.4430.9383.86223forward
CNT30607994Phaseolus vulgarisGossypium raimondii18.5724.5485.92213forward
CNT30207216Phaseolus vulgarisHelianthus annuus14.4730.4683.13166forward
CNT30718209Phaseolus vulgarisMalus domestica golden29.6425.2682.06340forward
CNT30626592Phaseolus vulgarisDaucus carota31.340.7580.22359forward
CNT30680665Phaseolus vulgarisTriticum urartu32.2634.0780370forward
CNT30348024Phaseolus vulgarisEragrostis tef29.0353.9783.18333forward
CNT30368337Phaseolus vulgarisSorghum bicolor32.6156.2480.75374forward
CNT30356640Phaseolus vulgarisLactuca sativa33.0456.9182.32379forward
CNT30408540Phaseolus vulgarisPapaver somniferum13.5136.3882.58155forward
CNT30704492Phaseolus vulgarisPrunus avium31.9138.9881.97366forward
CNT30319324Phaseolus vulgarisAsparagus officinalis12.2143.8986.43140forward
CNT3036059Phaseolus vulgarisCucumis melo32.6161.1181.28374forward
CNT30584058Phaseolus vulgarisEchinochloa crusgalli34.8731.682400forward
CNT30557734Phaseolus vulgarisPanicum hallii21.4534.9483.33246forward

Expression of CNT30524993

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MSLVFWNSRGAFLATPSAFTVKEVGSRQSFLALYLPGLKANDSTPPSMVGHWLAVPVPFTSRYVLLWISSKES*

>peptide 2 (36 aa)
MDGREWREVFGGCGASKISDRVRPTLIGSLKLMSMLS

>peptide 3 (58 aa)
MKHFCCSPSQVPPHLLCHQQAEQQHCHNRKSPLKLSGFPVATNCLMVKRNGTRSPPGS*

Sequence

>CNT30524993
TCGAAAAGGTAAAGAGAGATTTTAATTTTAGACATTATTATAATCGAAGTCGTTATAATATACACACAAGGTAATGCTCTGAGTGCTTCTTAACAAGTTA
CAAGAAAATAGAATTACAGCATAAAAAACATGTCTATGACTCAAGTTGAGCATACCAGACACCTTGGATCTTCACATCCTTAGGAGCTTTAGCCCCCAAA
TCAGTATCAGAAGGCTGAACACTCTCGAACACCCCAATAACCTCTCCAGTTTCTGGCTTGGTCTTGGTCACACTCAAGGTGATTTTCCCTTTGGAAGATG
AAGCACTTTTGTTGTTCTCCTTCGCAAGTTCCTCCTCATCTCCTCTGCCACCAGCAGGCAGAGCAACAGCATTGTCATAACCGGAAGTCCCCACTGAAGC
TTTCTGGCTTCCCAGTGGCCACCAACTGTTTGATGGTGAAGAGGAACGGCACACGCTCACCCCCGGGAAGCTGAACCGTCACAGCAGCATAGTCGATCCC
GTCTTTCTCCTCGAATTTGACCGTTCCGTCAGGTGTAACCTCGAAGGGACCCTCGATCTCGTCGAGGGTGTAGGTGAGACGGGTCATGAGCTTGGTGTTC
TGGAACTCGAGAGGGGCGTTCTTGGCCACACCCTCCGCCTTCACCGTGAAGGAAGTGGGTTCCAGACAGAGCTTCTTGGCGTTGTATTTGCCTGGCTTGA
AGGCGAACGATTCCACTCCGCCGTCGATGGTTGGGCACTGGTTAGCAGTTCCAGTTCCCTTCACTTCCAGATATGTCTTGCTCTGGATTTCGTCGAAGGA
GAGCTGAGGTGGCAAGAGCGAATCCTGCAAGTTTGGTGGCGTCGAGGCATTTCTGAGCCAAGTCTTTGAGATCAGAGTGAAGAGAGCAGGTGAGTTTTGG
TGCAGAGGGTTCCAAGCCGAAAGCCTTAGAGATGCATTGAGTGGATTTGAGGATGCCATTGATGCTGGTGCTAGGTGTATAGCCACCAAAGTGGTTGTGT
TGAGATAGAAAGATTTGTAAGTGGTTTTTGTGAGTGATGGATGGCAGAGAATGGAGAGAAGTATTTGGTGGCTGTGGTGCGAGTAAGATTTCCGATAGGG
TAAGACCAACTCTAATTGGATCACTCAAGCTAATGTCAATGCTTTCC