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Detailed information on CNT3039763


BLAST search results

BLAST vs Swiss-Prot:
sp|P04353|CALM_SPIOL, E-value = 9e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672655Marchantia polymorphaSetaria viridis27.932.2683.04171forward
CNT30545709Marchantia polymorphaIpomoea triloba26.9217.6781.82165forward
CNT30617482Marchantia polymorphaSesamum indicum30.1811.582.7185forward
CNT30156599Marchantia polymorphaPistacia vera35.0728.5182.79215forward
CNT3097357Marchantia polymorphaSolanum tuberosum31.169.5580.1191forward
CNT30125031Marchantia polymorphaPhyscomitrium patens29.0424.8680.9178forward
CNT30560106Marchantia polymorphaActinidia chinensis35.0740.4183.26215forward
CNT30553673Marchantia polymorphaOryza glaberrima32.7926.3480.1201forward
CNT30311950Marchantia polymorphaCamelina sativa29.8525.3879.78183forward
CNT30231884Marchantia polymorphaAnanas comosus43.5625.3380.9267forward
CNT30120491Marchantia polymorphaCitrus clementina33.2857.4682.84204forward
CNT30101815Marchantia polymorphaOryza rufipogon32.6336.980.5200forward
CNT30594303Marchantia polymorphaEragrostis curvula32.7931.3681.09201forward

Expression of CNT3039763

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GKLLAQIGHHVSELHCADETILVLVEHTEGLFKLLLGIGVFHFPGHQT*

>peptide 2 (37 aa)
MDAEPDETKQESTTRLPRRDGKPRTGMEGRAAGERGGA

>peptide 3 (79 aa)
MIVRETAGGSDLLNPRRGTWTTRKSPTHKARTRKGREMVVKLWTRNQTRRNKSRRHDYHDGTGSQGREWKGGPRGSVGER

>peptide 4 (68 aa)
VSFSPKLVITCRSSIALMKPFWSLSNTRKASLSSSSESVSFIFRAIRLKNSAKSIVPFPSASTSLIIS*

Sequence

>CNT3039763
CGGTAAGCTTCTCGCCCAAATTGGTCATCACGTGTCGGAGCTCCATTGCGCTGATGAAACCATTTTGGTCCTTGTCGAACACACGGAAGGCCTCTTTAAG
CTCCTCCTCGGAATCGGTGTCTTTCATTTTCCGGGCCATCAGACTTAAAAACTCCGCAAAGTCGATTGTACCGTTCCCATCGGCGTCCACTTCATTGATC
ATATCCTGAAGCTCAGCCTCAGTGGGATTCTGTCCCAAGGACCGCATAACGGTGCCGAGTTCCTTGGGGGACGCACCATCGCCATCCTTGTCGAACAGGC
TGAAAGCCTCCTTGAACTCAGCAATCTGCTCCTCGGTAAGCTGCTCAACCATTTTGCTAGATTGCTCCGAAAGATGATCGTCCGCGAAACAGCAGGTGGT
TCAGACTTACTCAACCCTCGACGCGGAACTTGGACAACGCGCAAGTCCCCTACACACAAAGCACGAACGAGGAAAGGAAGAGAGATGGTTGTTAAGTTAT
GGACGCGGAACCAGACGAGACGAAACAAGAGTCGACGACACGACTACCACGACGGGACGGGAAGCCAAGGACGGGAATGGAAGGGAGGGCCGCGGGGGAG
CGTGGGGGAGCGG