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Detailed information on CNT30148143


BLAST search results

BLAST vs Swiss-Prot:
sp|A2Y609|CALM2_ORYSI, E-value = 1e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30617519Brachypodium distachyonSesamum indicum33.338.5683.72172forward
CNT3097357Brachypodium distachyonSolanum tuberosum37.989.883.16196forward
CNT30387589Brachypodium distachyonTriticum turgidum36.829.1388.42190forward
CNT30586817Brachypodium distachyonMusa acuminata44.9623.2587.07232forward
CNT30234205Brachypodium distachyonBrassica oleracea45.1644.8985.84233forward
CNT30248464Brachypodium distachyonAvena sativa44.5737.7791.74230forward
CNT3080440Brachypodium distachyonBrassica juncea44.7742.3987.01231forward
CNT30231884Brachypodium distachyonAnanas comosus30.4314.990.45157forward
CNT30367843Brachypodium distachyonSorghum bicolor45.1632.8289.27233forward
CNT30483255Brachypodium distachyonChara braunii26.5512.3283.94137forward
CNT3026117Brachypodium distachyonPopulus trichocarpa25.1930.382.31130forward
CNT30332036Brachypodium distachyonDioscorea rotundata40.1265.7185.02207forward
CNT30497675Brachypodium distachyonDigitaria exilis45.1639.0990.99233forward
CNT30116198Brachypodium distachyonOryza nivara37.614.791.75194forward
CNT3039761Brachypodium distachyonMarchantia polymorpha21.7110.0885.71112forward

Expression of CNT30148143

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MTELCGGDEAILVLVEHPEGLLELGDLVVGELVRHGKLLRAVSLPPWLLAGEHWREGDLLFDRVGWGGRGGRGG

>peptide 2 (31 aa)
MKPFWSLSNTLKASLNSAIWSSVSWSAMVSF*

>peptide 3 (67 aa)
GETGEGLHQCSSATTATSTVLQGRRGNKSRIPLLIYAMHNFLLPGNNDTTTMGSLDHLAIITLTNSS*

>peptide 4 (33 aa)
ARQGRGFINVPQQLRLLVRFFREEEEIRVAFLC*

Sequence

>CNT30148143
CGGCGAGACAGGGGAGGGGCTTCATCAATGTTCCTCAGCAACTACGGCTACTAGTACGGTTCTTCAGGGAAGAAGAGGAAATAAGAGTCGCATTCCTTTG
CTAATATATGCAATGCACAATTTCCTCCTTCCGGGTAATAATGATACCACCACCATGGGCTCGCTGGATCACTTGGCCATCATCACCTTGACGAACTCCT
CGTAGTTGATCTGGCCGTCGCCGTCCACATCAGCTTCGCGGATCATCTCGTCGACCTCCTCATCCGTTAGCTTCTCGCCGAGGTTGGTCATCACATGACG
GAGCTCTGCGGCGGAGATGAAGCCATTCTGGTCCTTGTCGAACACCCTGAAGGCCTCCTTGAACTCGGCGATCTGGTCGTCGGTGAGTTGGTCCGCCATG
GTAAGCTTCTGAGGGCTGTATCCTTGCCTCCTTGGCTTCTCGCGGGCGAGCACTGGAGAGAGGGGGATCTCTTGTTTGACCGTGTGGGGTGGGGAGGGAG
AGGAGGAAGAGGAGGC