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Detailed information on CNT30534974


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693832Eucalyptus grandisOryza sativa30.043.5591.7873forward
CNT30672188Eucalyptus grandisSetaria viridis29.221494.3771forward
CNT30378266Eucalyptus grandisArabidopsis thaliana26.7519.0686.1565forward
CNT30617519Eucalyptus grandisSesamum indicum23.052.7991.0756forward
CNT3097357Eucalyptus grandisSolanum tuberosum30.453.791.8974forward
CNT30387589Eucalyptus grandisTriticum turgidum29.223.4195.7771forward
CNT30144666Eucalyptus grandisMedicago truncatula30.457.7386.4974reverse complement
CNT30248464Eucalyptus grandisAvena sativa28.411.3395.6569forward
CNT3073928Eucalyptus grandisBrassica juncea23.4613.0192.9857forward
CNT3011614Eucalyptus grandisZea mays28.49.1989.8669forward
CNT30231884Eucalyptus grandisAnanas comosus29.226.7498.5971forward
CNT30625935Eucalyptus grandisDaucus carota30.455.2190.5474forward
CNT30367843Eucalyptus grandisSorghum bicolor28.49.7289.8669forward
CNT30327337Eucalyptus grandisAsparagus officinalis28.48.2292.7569reverse complement
CNT3037982Eucalyptus grandisCucumis melo22.229.7894.4454forward
CNT30332036Eucalyptus grandisDioscorea rotundata20.9916.1988.2451forward
CNT30149356Eucalyptus grandisBrachypodium distachyon30.043.1391.7873forward
CNT30497675Eucalyptus grandisDigitaria exilis28.411.5891.369forward
CNT30335796Eucalyptus grandisCynara cardunculus28.8117.5988.5770forward

Expression of CNT30534974

Peptides detected in this lncRNA

>peptide 1 (42 aa)
AVLVEQAEGLLELGDLVVGELIRHFLLSLSGKPRSSSSSLSP*

Sequence

>CNT30534974
CGCCGTCCTTGTCGAACAAGCTGAAGGCCTCCTTGAACTCGGAGATCTGGTCGTCGGTGAGCTGATCCGCCATTTTCTTCTCTCTCTCTCCGGAAAACCT
CGTTCCTCTTCCTCCTCCTTATCACCCTGATTTTCTTTAAATCGAAACAACAAAGGAGATGGAGAGGAAGAGAGAGAAACTTCTAGAGAGAGAGAGAGAC
GCGGTCGATTTCTTCGGACAAGACGAGCGATTTATGTTCGTCG