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Detailed information on CNT30386646


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40459|PSBO_TOBAC, E-value = 2e-120

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674885Triticum turgidumSetaria viridis13.4349.7294.92177forward
CNT30515361Triticum turgidumJuglans regia18.8256.1179.03248forward
CNT3091587Triticum turgidumSolanum tuberosum18.8967.4879.12249forward
CNT30592113Triticum turgidumMusa acuminata32.6359.0786.28430forward
CNT30508746Triticum turgidumSolanum lycopersicum15.8625.2479.9209forward
CNT30244672Triticum turgidumAvena sativa53.7995.4291.54709forward
CNT30659249Triticum turgidumTriticum dicoccoides52.0566.4199.71686forward
CNT30597992Triticum turgidumFraxinus excelsior9.6436.3984.25127forward
CNT3010855Triticum turgidumZea mays28.5367.0290.16376forward
CNT30680592Triticum turgidumTriticum urartu61.0889.6495.65805forward
CNT30571093Triticum turgidumVitis vinifera8.1225.684.11107forward
CNT30557822Triticum turgidumPanicum hallii17.8333.6794.04235forward

Expression of CNT30386646

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPSALTVKEVGSRQNFFISYLPALKGKESTPPSMVGHWFAVPVPFTSM*

>peptide 2 (33 aa)
MPSFSSNLRVPSAPTSSGPSISPAARSSGCPRP*

>peptide 3 (32 aa)
MLPVEEDAFFTFSLANSSSSPLPPAGSATALS*

>peptide 4 (30 aa)
MKIFRVAMCLTIKVGHTCITKRRKCQQIIL*

Sequence

>CNT30386646
CTTGACCATTAAAGTTATCATACTCGCATCAATAAATTTGCCATGAAAATATTCAGAGTTGCTATGTGTTTGACCATTAAAGTTGGTCATACTTGCATCA
CTAAACGAAGAAAGTGTCAACAAATAATTTTGTGAACATTCATGGAGGGTCAATATCATGAGTTGGCGAGGAAGAAACAATAACAGAAGCTAAAATATAA
ACCGACACCCTGGGTTTAGATTACTAGATACACACACAAACACACATTGTTGCCTCGATTGTTTCCTCTCCAACGATCAACCCACGTACGCATGCACACA
AGATGAGCATCTTCACTTCTGCTCTGCTCTAGTTAGACTCGAGCTGCGCGTACCACACACCCTGGATCTTGACATCCTTGGGCGCCTTGGCGCCGAGGTC
GGTGTCTGACGGCTGCACGCTCTCGAAGACGCCGATCACCTCGCCGGTCTCCGGCTTGCTCTTGGTCACGCTGAGCGTGATGTTGCCTGTGGAGGAGGAC
GCGTTCTTCACGTTCTCCTTGGCCAACTCCTCCTCGTCTCCTCTGCCTCCGGCGGGTAGCGCCACGGCGTTGTCGTAGCCAGTAGAGCCACCACGGCCCT
TTGGGTCGAGGAAAGACGAACCCCTGTAGCTGGGCACAAGGAAGGGCCCGCTGAAGCTCTCGGGCTTGCCGGTGGCGACGAGCTGCTTGACGGTGAAGAG
GAAGGGCACGCGCTCGCCTCCGGGGAGCTGCACGGTGACGGCCGCATAGTCGATGCCGTCCTTCTCCTCGAACTTGAGGGTGCCGTCGGCGCCGACCTCG
AGCGGGCCTTCCATCTCGCCGGCGGCTCGTTCTTCTGGATGCCCTCGGCCTTGACGGTGAAGGAGGTGGGCTCCAGGCAGAACTTCTTCATCTCGTACTT
GCCGGCCTTGAAGGGGAAGGAGTCGACGCCGCCGTCGATGGTCGGGCACTGGTTCGCGGTGCCGGTACCCTTCACCTCCATGTAGGTCTTGCTCTGGATC
TCGTCGAAGGTCAGCCTCTTGGGCGCCCCCTCCGCGCTCGCGCCCTGCACCCACGCGCGTCACTCTAGCTAGCTGGACTGGAGTGGAGTAAACGGCCACG
GACGGCAATAGAACGGATTAGTCAGCTTACGGAGACGAGGAGGGCAGAGGTGATCCTGGCGCCAGCGTCGACGCCGAACGCCCGGGCGACGTGCGACGAC
GGCCGCGCGGAGGAGGCCCGGCCGCCGATCTTGGCCGGCATCAGCGTAGCCGCGGCTTGGAGAGACGCTGCCATGTTGGTCGGTGGCTTGGCACGCGGGA
GGATCGATCCCACTCGTG