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Detailed information on CNT30571093


BLAST search results

BLAST vs Swiss-Prot:
sp|P84989|PSBO_POPEU, E-value = 5e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535986Vitis viniferaEucalyptus grandis36.3620.7782.89152forward
CNT30546481Vitis viniferaIpomoea triloba23.6817.0486.8799forward
CNT30378380Vitis viniferaArabidopsis thaliana25.1221.382.86105forward
CNT30525147Vitis viniferaPhaseolus vulgaris34.2123.3786.71143forward
CNT30710434Vitis viniferaGlycine max31.113.786.92130forward
CNT3091587Vitis viniferaSolanum tuberosum42.1147.789.2176forward
CNT30181115Vitis viniferaSecale cereale25.68.0782.24107forward
CNT30288970Vitis viniferaTriticum aestivum25.67.8684.11107forward
CNT30221336Vitis viniferaHordeum vulgare25.615.4882.24107forward
CNT30386646Vitis viniferaTriticum turgidum25.68.1284.11107forward
CNT30592113Vitis viniferaMusa acuminata27.5115.884.35115forward
CNT30543261Vitis viniferaBrassica napus25.3619.6783.96106forward
CNT30237633Vitis viniferaBrassica oleracea25.3623.0983.02106forward
CNT30436686Vitis viniferaAegilops tauschii25.69.9483.18107forward
CNT30659249Vitis viniferaTriticum dicoccoides25.610.3684.11107forward
CNT309111Vitis viniferaZea mays25.614.5882.24107forward
CNT30681552Vitis viniferaTriticum urartu25.612.0683.18107forward
CNT30408540Vitis viniferaPapaver somniferum20.5720.1984.8886forward
CNT30584070Vitis viniferaEchinochloa crusgalli25.69.0883.18107forward
CNT3040045Vitis viniferaMarchantia polymorpha21.297.7383.1589forward

Expression of CNT30571093

Peptides detected in this lncRNA

>peptide 1 (59 aa)
FVWFAGCNELFDGEEEGHTLTTGQLNSDSSIVNSIFLLKLNGAITRYFKWSLNLIKGVC*

>peptide 2 (39 aa)
MRLPFFSLLCYHWLVSVEESLPTTLQTIEKEAFGVWRREN

>peptide 3 (75 aa)
MSLPKALHTLWEDLNCRLVRVGTPTLVGCISVAAACNEAAIFFSSLLSLASECGGVSAYHLTNYRKGSVWCVAERE

Sequence

>CNT30571093
AATTTGTCTGGTTTGCCGGATGCAACGAGCTGTTTGATGGTGAAGAGGAAGGGCACACGCTCACCACCGGGCAGCTGAACAGTGACAGCAGCATAGTCAA
TTCCATCTTTCTCCTCAAACTTAACGGTGCCATCACTAGATACTTCAAATGGTCCCTCAATCTCATCAAGGGTGTATGTTAACCGAGTCATGAGCTTGCC
AAAGGCCTTGCATACACTCTGGGAAGATCTCAATTGCAGGCTGGTACGAGTTGGCACGCCCACCTTGGTGGGCTGCATCAGCGTGGCCGCTGCTTGCAAT
GAGGCTGCCATTTTTTTCTCTTCTTTGCTATCACTGGCTAGTGAGTGTGGAGGAGTCTCTGCCTACCACCTTACAAACTATAGAAAAGGAAGCGTTTGGT
GTGTGGCGGAGAGAGAAT