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Detailed information on CNT30705057


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 1e-158

BLAST vs NONCODE:
NONBNAT005173, E-value = 6e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315824Prunus aviumCorylus avellana68.4453.5584.63566forward
CNT30514316Prunus aviumJuglans regia72.5575.0982.17600forward
CNT30702989Prunus aviumQuercus lobata67.8458.7479.86561forward
CNT30500907Prunus aviumCoffea canephora68.3260.3683.36565forward
CNT30616124Prunus aviumSesamum indicum68.4449.6182.69566forward
CNT30269327Prunus aviumChenopodium quinoa62.1558.7482.3514forward
CNT30525395Prunus aviumPhaseolus vulgaris67.7154.9685560forward
CNT30628736Prunus aviumVigna unguiculata68.0876.0884.55563forward
CNT30504491Prunus aviumNicotiana attenuata68.0859.3983.84563forward
CNT30709151Prunus aviumGlycine max56.8365.6484.47470forward
CNT30633518Prunus aviumCapsicum annuum68.4461.9383.57566forward
CNT3091778Prunus aviumSolanum tuberosum68.0861.482.59563forward
CNT30562269Prunus aviumActinidia chinensis68.3259.4181.42565forward
CNT3088186Prunus aviumVigna radiata68.4451.9382.69566forward
CNT30234656Prunus aviumBrassica oleracea43.4165.5181.62359forward
CNT30508800Prunus aviumSolanum lycopersicum67.3559.782.41557forward
CNT30171121Prunus aviumTrifolium pratense33.983283.99281forward
CNT30146084Prunus aviumMedicago truncatula64.0951.0681.7530forward
CNT30313626Prunus aviumCamelina sativa64.5746.3180.34534forward
CNT30598305Prunus aviumFraxinus excelsior46.5556.3781.3385forward
CNT30609649Prunus aviumGossypium raimondii61.9167.6482.62512forward
CNT30714756Prunus aviumMalus domestica golden52.4842.7684.56434forward
CNT30623258Prunus aviumDaucus carota64.8154.3684.33536forward
CNT30621493Prunus aviumCajanus cajan67.7141.7383.75560forward
CNT30359492Prunus aviumLactuca sativa64.0961.9983.77530forward
CNT30153357Prunus aviumPrunus persica10046.8395.04827forward
CNT30429024Prunus aviumPapaver somniferum6342.3281.96521forward
CNT30119285Prunus aviumCitrus clementina68.0862.9882.59563forward
CNT30176340Prunus aviumVigna angularis44.1439.3383.56365forward
CNT30336168Prunus aviumCynara cardunculus68.4455.8284.1566forward
CNT30725332Prunus aviumLupinus angustifolius67.7154.3785560forward

Expression of CNT30705057

Peptides detected in this lncRNA

>peptide 1 (61 aa)
PVTMACTKKPNMENMASLPFFSSFTFSSAKASGSSARPNGSKLPPGYNGSVISPRGPPATL*

>peptide 2 (29 aa)
MAHLEWITSSSRFLAKVSGSAESPAVSQP*

>peptide 3 (35 aa)
MVTRPSPRRLDAEGLSLTAWPAREGEERAIVEEAI*

>peptide 4 (46 aa)
CNNGLHKETKHGKHGQSSILQLLHLQLSESLWILSKTQWVKAPSWV*

Sequence

>CNT30705057
CCTGTAACAATGGCCTGCACAAAGAAACCAAACATGGAAAACATGGCCAGTCTTCCATTCTTCAGCTCCTTCACCTTCAGCTCAGCGAAAGCCTCTGGAT
CCTCAGCAAGACCCAATGGGTCAAAGCTCCCTCCTGGGTATAATGGGTCAGTGATCTCCCCGAGAGGCCCACCTGCAACTCTGTAACCTTCCACTGCGCC
CATCAAGATAACTTGTGTGGCCCAGATAGCCAAAATGCTTTGGGCATGGACTAAGCTTGGGTTTCCCAAGTAGTCTAGCCCACCCTCACTGAATATCTGG
GCTCCAGCCTTGAACCATACAGCCTCACCGAACTTGACCCCGTTACGAGACAAGAGTTCGGGGAAAACGCAGCCCAGAGCACCGAGCATGGCCCATCTTG
AATGGATAACTTCAAGCTCACGGTTCTTGGCAAAGGTCTCTGGGTCAGCTGAGAGCCCAGCAGTGTCCCAACCGTAATCGCCAGGGAATTCTCCAGTGAG
GTAAGAAGGGGACTCACCGGAGAATGGGCCCAAGTATTTAGCACGGTCAGGGCCATACCACGGGCTACCGGATGATACATTTTTTTTGGACTTGGCTGCG
GTTTTGCGCATGGTGACTCGGCCCTCACCAAGAAGGTTAGATGCAGAGGGACTAAGCTTGACAGCTTGGCCAGCAAGAGAAGGGGAGGAGAGAGCCATTG
TTGAAGAAGCCATTTGAGGAAAAATGAAAGTGTATTATTTGTGAAAATCTTCAGTCTCTTAGACAATGTGAGAGGGGCGAGTGCTTATTTTCTTTGGGAA
GAAGAGACGTTGGTGGGTATTTGTATA