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Detailed information on CNT30508800


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT001352, E-value = 5e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316082Solanum lycopersicumCorylus avellana70.5369.1984.65658forward
CNT30373848Solanum lycopersicumArabidopsis thaliana70.8563.1381.39661forward
CNT30728214Solanum lycopersicumCorchorus capsularis45.5550.4886.59425forward
CNT30628736Solanum lycopersicumVigna unguiculata60.9976.8983.83569forward
CNT30504491Solanum lycopersicumNicotiana attenuata91.3289.8791.31852forward
CNT30709739Solanum lycopersicumGlycine max57.4556.3684.33536forward
CNT30146084Solanum lycopersicumMedicago truncatula70.3163.284.91656forward
CNT30356707Solanum lycopersicumLactuca sativa49.9540.0787.98466forward
CNT30705057Solanum lycopersicumPrunus avium59.767.3582.41557forward
CNT30119285Solanum lycopersicumCitrus clementina69.6772.7184.92650forward
CNT30499258Solanum lycopersicumDigitaria exilis66.1360.9783.79617forward

Expression of CNT30508800

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVILPFPEISEAEGESFTACPAKEGEERAIVAAAMVFKERKMRELLV*

>peptide 2 (67 aa)
MPPGLQQGLMGRSCHLGRVGRQPHQEVHQQYGNLQRLPSRQLGKPRWLRCSVHGPSLGCPSSQVLPR*

>peptide 3 (36 aa)
MDQAWVAQVVKSSLAEDLGSGLEPHSLTELDTVTGQ*

>peptide 4 (37 aa)
VITDNYFTRPSNNQILRMFKIFIFREQSLWRKPKRCC*

Sequence

>CNT30508800
AGTAATTACTGACAACTACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATGTTTAAGATTTTCATTTTCCGGGAACAAAGTTTGTGGCGAAAGCCC
AAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACAAAGAATCCAAACATAGAGAA
CATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGTCGAAGCTGCCACCTGGGTAG
AGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCTAAGATGCTCT
GTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCTCCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACC
GTTACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCA
GGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAA
CACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCAGAGATTTCTGAGGCAGAGGG
TGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGAAAATGAGGGAGTTGCTAGTT
TGATATGTAAAAGTTAGTTGTGATGAGCTGAAG