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Detailed information on CNT30336168


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 0.0

BLAST vs NONCODE:
NONBNAT005173, E-value = 2e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30380511Cynara cardunculusManihot esculenta34.5249.7288.29350forward
CNT30504491Cynara cardunculusNicotiana attenuata65.0969.6286.82660forward
CNT30313761Cynara cardunculusCamelina sativa56.7168.7883.48575forward
CNT30359492Cynara cardunculusLactuca sativa62.5274.1590.85634forward
CNT30409978Cynara cardunculusPapaver somniferum65.1969.2980.79661forward
CNT30705057Cynara cardunculusPrunus avium55.8268.4484.1566forward

Expression of CNT30336168

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MSFSNKSLSGGKVCGIRPGIVGNGVSKVVCKVLQWSLSCDNGLNEETKHREHG*

>peptide 2 (52 aa)
METRPFPKTSEDEGAVFTTCPVKGEERAMVEAAIGYFLKVEGKNIERMYSRGG

>peptide 3 (58 aa)
MGQSYHQGKVGQQSRPRVHLLLCNLQPHPSRSLGWPRWPRCFGHGPNLGFPSNQDHLR*

>peptide 4 (43 aa)
MDQTWVSQVIKTTFAKDLCSSLEPXGLTKLHTVTSQELGEDAP*

>peptide 5 (32 aa)
MASLPFLISFTFNSAKASGSSARPNGSKLPPG*

Sequence

>CNT30336168
TATTGGGTTTTGATCAGCGAAGAATAACCGAAAGAAATTAAGCAACAAACTTTTTTTATTGAGAAAGGAGTTACGAGTAATTTACAAGGAAATTAACATG
TTCTCAAACCTTTACAAACCACAATTCTCAATATAACATAATGTCCTTCTCAAATAAATCACTTTCCGGGGGCAAAGTTTGTGGCATAAGACCAGGCATT
GTTGGCAACGGGGTCAGCAAGGTGGTCTGCAAGGTTCTCCAATGGTCCCTTTCCTGTGACAATGGCTTGAACGAAGAAACCAAACATAGAGAACATGGCT
AGTCTTCCATTCTTGATCTCTTTTACCTTCAACTCAGCAAAAGCCTCTGGATCATCAGCAAGACCCAATGGGTCAAAGCTACCACCAGGGTAAAGTGGGT
CAACAATCTCGCCCAAGGGTCCACCTGCTACTCTGTAACCTTCAACCGCACCCATCAAGATCACTTGGGTGGCCCAGATGGCCAAGATGCTTTGGGCATG
GACCAAACTTGGGTTTCCCAAGTAATCAAGACCACCTTCGCTAAAGATTTGTGCTCCAGCCTTGAACCAYACGGCCTCACCAAACTTCACACCGTTACGA
GCCAAGAGCTCGGGGAAGACGCACCCTAGAGCTCCAAGCATGGCCCATCTGCAGTGAATGACCTCAAGCTCACGGTTCTTGGCAAATGTTTCTGGGTCAG
CAGAAAGTCCGGCGGTGTCCCASCCGTAGTCACCTGGGAATTCACCGGTGAGGTATGATGGAGCCTCGCCGGAGAATGGGCCTAGGTACTTGACACGGTC
AGGACCGTACCATGGGCTTCCTGATGGTGCGACCTTCTTGACAGCAGTTTTCCTCATGGAAACCCGTCCATTTCCGAAAACTTCAGAAGATGAGGGAGCT
GTTTTCACCACTTGTCCGGTGAAGGGAGAAGAAAGAGCCATGGTGGAAGCAGCCATTGGATATTTTCTCAAAGTAGAAGGTAAGAATATTGAGAGAATGT
ATAGTCGAGGGGGG