Detailed information on CNT30176340


BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 5e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315824Vigna angularisCorylus avellana39.3334.5386.58365forward
CNT30728214Vigna angularisCorchorus capsularis46.1250.8384.11428forward
CNT30628996Vigna angularisVigna unguiculata49.57104.3194.13460forward
CNT30709015Vigna angularisGlycine max60.2470.7690.34559forward
CNT3046618Vigna angularisPrunus dulcis39.3343.6682.47365forward
CNT30564070Vigna angularisActinidia chinensis37.2840.4783.24346forward
CNT30609983Vigna angularisGossypium raimondii46.0153.0481.5427forward
CNT30705057Vigna angularisPrunus avium39.3344.1483.56365forward
CNT30725370Vigna angularisLupinus angustifolius39.2234.484.62364forward

Expression of CNT30176340

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MRVPWRKQQPLFQRTFLFLCALCFEVWEL*

>peptide 2 (46 aa)
MLTLPTSGADGASLTALPAKEGDESAMEEAAAIVPKNFPFSLCSVL*

>peptide 3 (30 aa)
NYDLKHVSFTGIKESKFKLVATREEKKNVK*

>peptide 4 (30 aa)
MAHLEWMTSNSRFLAKVSGTGARRRMGPST*

Sequence

>CNT30176340
AATTATGACCTCAAACATGTTTCTTTTACCGGAATTAAGGAATCGAAGTTCAAATTGGTGGCGACAAGAGAAGAGAAAAAAAACGTAAAATAGAGGAGAA
GATGGAAATTTGTAAAAAGCAAGTAACATTAAGTTGGATCGGATACACAAGATGATTCACATTATCTGAAGTACATTGCAATAACATATACTTCAACAAA
CAGAAATCTAAAACTCTCGAGGGCACAAATCATTCTGTTGACGCTCACTTTCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACTGGGT
CAGCAAGGTGCTCAGCGAAAGCCTCTGGGTCGTCAGCGAGACCCAATGGGTCGAAGCTGCCACCGGGGTAAATGGGGTCAGTGACCTCACCGAGAGGCCC
ACCGGCAATACGGTAACCCTCAACGGCGCCCATGAGGATGACTTGGGTGGCCCAGATGGCGAGGATGCTCTGAGCGTGGATGAGGCTTGGGTTGCCCAAG
TAGTCGAGCCCACCCTCGCTGAAGATCTGGGAACCAGCTTTGAACCACACGGCCTCGCCGAATTTCACGCCGTTGCGGGACAAGAGTTCGGGGAAGACGC
AGCCCAAGGCTCCGAGCATGGCCCACCTGGAGTGGATGACTTCCAACTCACGGTTCCTGGCGAAGGTCTCTGGGACGGGGGCTCGCCGGAGAATGGGCCC
AAGTACTTGACACGGTCTGGGCCGTACCATGGGCTTCCGGAGGAAACCTGCTTGGTGACGGTCTTCCTCATGCTGACCCTCCCGACTTCGGGGGCTGATG
GGGCAAGCTTGACGGCCTTGCCAGCCAAGGAGGGGGATGAGAGTGCCATGGAGGAAGCAGCAGCCATTGTTCCAAAGAACTTTCCTTTTTCTTTGTGCTC
TGTGCTTTGAGGTGTGGGAGTTGTGAAT