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Detailed information on CNT30359492


BLAST search results

BLAST vs Swiss-Prot:
sp|P27492|CB21_TOBAC, E-value = 5e-151

BLAST vs NONCODE:
NONBNAT005173, E-value = 1e-85

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534250Lactuca sativaEucalyptus grandis67.7253.0782.9579forward
CNT30315824Lactuca sativaCorylus avellana72.9859.0484.62624forward
CNT30702989Lactuca sativaQuercus lobata72.6365.0379.87621forward
CNT30373848Lactuca sativaArabidopsis thaliana64.2152.4481.79549forward
CNT30500907Lactuca sativaCoffea canephora72.5166.2483.23620forward
CNT30616124Lactuca sativaSesamum indicum68.6551.4585.35587forward
CNT30269327Lactuca sativaChenopodium quinoa57.4356.1183.91491forward
CNT30728214Lactuca sativaCorchorus capsularis50.1850.9584.62429forward
CNT30525395Lactuca sativaPhaseolus vulgaris66.956.1384.97572forward
CNT30628736Lactuca sativaVigna unguiculata62.6972.4384.14536forward
CNT3046618Lactuca sativaPrunus dulcis72.9874.6483.81624forward
CNT3099363Lactuca sativaSolanum tuberosum69.3656.7585.83593forward
CNT30562269Lactuca sativaActinidia chinensis69.8262.7885.09597forward
CNT3088186Lactuca sativaVigna radiata72.9857.2581.73624forward
CNT30541860Lactuca sativaBrassica napus60.785.3683.04519forward
CNT30234343Lactuca sativaBrassica oleracea63.0454.3982.37539forward
CNT30508942Lactuca sativaSolanum lycopersicum69.4756.5285.02594forward
CNT30173250Lactuca sativaTrifolium pratense61.445.5382.48525forward
CNT30146374Lactuca sativaMedicago truncatula72.9866.3883.33624forward
CNT30313626Lactuca sativaCamelina sativa65.9648.9282.8564forward
CNT3079851Lactuca sativaBrassica juncea60.5850.3983.78518forward
CNT30263433Lactuca sativaBrassica rapa37.8972.4884.88324forward
CNT30609649Lactuca sativaGossypium raimondii64.4472.7984.21551forward
CNT30623366Lactuca sativaDaucus carota67.2555.2485.91575forward
CNT30621493Lactuca sativaCajanus cajan72.9846.584.46624forward
CNT30153357Lactuca sativaPrunus persica72.9835.3383.81624forward
CNT30705057Lactuca sativaPrunus avium61.9964.0983.77530forward
CNT3055180Lactuca sativaAmborella trichopoda66.955.3780.94572forward
CNT30119285Lactuca sativaCitrus clementina72.9869.883.01624forward
CNT30336168Lactuca sativaCynara cardunculus74.1562.5290.85634forward
CNT30725299Lactuca sativaLupinus angustifolius64.2154.1484.34549forward

Expression of CNT30359492

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MENIASLPFLISFTFNSAKASGSSARPNGSKLPPG*

>peptide 2 (86 aa)
MDQTRVSQVIKPTFTEDLGSSLEPYSLTELHTITGQELREDAAKSSKHCPSAVDDLKLTVLGKCLWISRKSGGVPAVVTWEFTGQV*

>peptide 3 (31 aa)
MGRSYHQGKVGQQPHPMVHRQFCSPQQHPSR*

>peptide 4 (58 aa)
MSLDQQKVRRCPSRSHLGIHRSGMMEPRRRMGLGTCFHCLACERRGESHGGSSHCKFS*

Sequence

>CNT30359492
TACCCAAAAATAGCTATATATTAATTCACAAATCATTTTACATCAAAACCCTTATTTAGTACATTCACTTTCCGGGGACAAAGTTTGTAGCATAAGACCA
GGCGTTATTTGCAACAGGGTCAGCAAGGTGGTCAGCCAAGTTCTCCAACGGCCCCTTTCCTGTGACAATGGCTTGAACAAAGAACCCAAACATGGAGAAC
ATAGCCAGTCTCCCATTCTTGATCTCCTTCACCTTCAACTCAGCAAAAGCCTCTGGATCATCTGCAAGGCCCAATGGGTCGAAGCTACCACCAGGGTAAA
GTGGGTCAACAACCTCACCCAATGGTCCACCGGCAATTCTGTAGCCCTCAACAGCACCCATCAAGATGACTTGGGTGGCCCAGATAGCCAAGATGCTCTG
AGCATGGACCAAACTAGGGTTTCCCAAGTAATCAAGCCCACCTTCACTGAAGATCTGGGATCCAGCCTTGAACCATACAGCCTCACCGAACTTCACACCA
TTACGGGCCAAGAGCTCAGGGAAGACGCAGCCAAGAGCTCCAAGCATTGCCCATCTGCAGTGGATGACCTCAAGCTCACGGTTCTTGGAAAATGTCTCTG
GATCAGCAGAAAGTCCGGCGGTGTCCCAGCCGTAGTCACCTGGGAATTCACCGGTCAGGTATGATGGAGCCTCGCCGGAGAATGGGCCTAGGGACTTGTT
TTCACTGCTTGGCCTGCGAAAGGAGAGGAGAGAGCCATGGTGGAAGCAGCCATTGTAAGTTTTCTTAAATTAGAAACTAAAAATATTTAGAAAGTTGGGG
GCTGACTGCTTAAGTCATATGGTTCTTCACAAGTGCTATAAATAGGATGGTGCAT