Detailed information on CNT30350309


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673615Eragrostis tefSetaria viridis46.5657.6693.36271forward
CNT30303776Eragrostis tefTriticum aestivum28.8740.2986.31168forward
CNT30543417Eragrostis tefBrassica napus39.8633.7780.17232forward
CNT30442227Eragrostis tefAegilops tauschii40.5549.1784.75236forward
CNT3059858Eragrostis tefArabidopsis lyrata26.4626.8885.06154forward
CNT3082002Eragrostis tefBrassica juncea39.6931.6980.52231forward
CNT30259051Eragrostis tefBrassica rapa39.8629.0480.17232forward

Expression of CNT30350309

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQCLKRFTIINQRARIHTHLVAQLHRQAAASNATG*

>peptide 2 (41 aa)
MKYPRMASMASLPFLISLSLSSLSDFSSLPNPSGLKIGPPG*

>peptide 3 (33 aa)
MNRDAVPQTLHHHQPTRTNPHTSRRSIAPTGSS*

Sequence

>CNT30350309
TTGTTGGCAATGTTGAGGTAGTATCACGGTAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGACGATCAATTGCTAT
TTTGTTACAAGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAACCAACGCGCACGAATCCACACACATCTCGT
CGCTCAATTGCACCGACAGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTAAAGCGCAATCTTTCTAGTGGAACTTGAGGCTGGTGAGGAC
GTTGTTGTTGACGGGGTCGGCGAGGTGGTCGAGCAGGTTCTGGTAGGGTCCTTCGCCGGTGACAAGGCCCTGGATGAAGTACCCCAGGATGGCGAGCATG
GCGAGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTCTCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGTAGG
CCGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGCCCAGCTTGCCGAACACCTCCGGGGCGATGGAGCCCGC