CANTATAdb - search

Detailed information on CNT30543413

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 3e-100

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3059858	Brassica napus	Arabidopsis lyrata	91.53	96.16	90.38	551	forward
CNT3073783	Brassica napus	Brassica juncea	100.5	88.06	97.85	605	forward
CNT30259451	Brassica napus	Brassica rapa	100.66	83.13	98.02	606	forward

Expression of CNT30543413

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 2 (33 aa)
MASIASLPFLTSLSFNSFIDFSSFPNPRGIVYP*

>peptide 3 (34 aa)
MKIISVELEAGQDIVVDGIRQMIKKVLVRPHTGH*

Sequence

>CNT30543413
GATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGGGATC
CGCCAAATGATCAAGAAGGTTCTGGTAAGGCCCCACACCGGTCACTAGTCCCTGCACAAAATAGCCTAGGATGGCGAGCATTGCCAGTCTACCGTTCTTG
ACCTCCTTGAGTTTCAACTCCTTCATCGACTTCTCGTCTTTTCCAAACCCAAGAGGTATTGTTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCT
CCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTT
TGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTGCAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGT
TGATGATCTCTCCGTAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTCTGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTAA
GC