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Detailed information on CNT30718929


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Malus domestica goldenManihot esculenta17.6725.9181.71164forward
CNT30631202Malus domestica goldenVigna unguiculata12.9325.1682.5120forward
CNT3045175Malus domestica goldenPrunus dulcis19.9440.3985.95185forward
CNT30543414Malus domestica goldenBrassica napus10.563584.6998forward
CNT30233458Malus domestica goldenBrassica oleracea8.4129.3288.4678forward
CNT30310790Malus domestica goldenCamelina sativa10.8835.0783.17101forward
CNT3073366Malus domestica goldenBrassica juncea10.8820.3285.15101forward
CNT30259035Malus domestica goldenBrassica rapa10.8821.8185.15101forward
CNT30597278Malus domestica goldenFraxinus excelsior14.4426.5981.34134forward
CNT30608086Malus domestica goldenGossypium raimondii9.8123.2787.9191forward
CNT30217954Malus domestica goldenKalanchoe fedtschenkoi18.5347.7883.14172forward
CNT30214152Malus domestica goldenHelianthus annuus12.526.383.62116forward
CNT30368762Malus domestica goldenSorghum bicolor12.522.9781.03116forward
CNT30422640Malus domestica goldenPapaver somniferum15.4134.9684.62143forward
CNT30573352Malus domestica goldenVitis vinifera16.723.7785.81155forward
CNT3027741Malus domestica goldenTheobroma cacao16.4935.0185.62153forward
CNT30118654Malus domestica goldenCitrus clementina14.1224.3582.44131forward
CNT3037927Malus domestica goldenCucumis melo14.3327.8287.97133forward
CNT30329767Malus domestica goldenDioscorea rotundata19.6129.7482.97182forward
CNT30583519Malus domestica goldenEchinochloa crusgalli12.545.3181.9116forward
CNT3048728Malus domestica goldenCucumis sativus10.6725.9883.8499forward

Expression of CNT30718929

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLPFFTSLSFNSFIDFSSFPNPSGLNKGPPG*

>peptide 2 (44 aa)
MTKCSALNLHFFLGENLSYNMLYISSCLSLSSRNKVKYNAYKHN*

>peptide 3 (33 aa)
LNKITQNCQHGKPPILHFLELQLIHRLLVFPKP*

>peptide 4 (40 aa)
MDPGKGSLGRDKAELAQDFWGNCTNCTQHGVTSVDDFTVG*

>peptide 5 (33 aa)
MSHDGVTVILKGESSIGTCHPSKKGSAWKQTTTV

>peptide 6 (55 aa)
MNPPVPSGSERPNGSNPKSPGRLQVKFNHFSKVNLGDDQVQCFKFTFLFGRKFVL*

Sequence

>CNT30718929
CCTGAATAAAATAACCCAAAATTGCCAGCATGGCAAGCCTCCCATTCTTCACTTCCTTGAGCTTCAACTCATTCATCGACTTCTCGTCTTTCCCAAACCC
TAGCGGGTTGAACAAAGGCCCACCGGGGTAAGCTGGGTTACCCGACCCGCCCAAGTACTTCTCAAGGCCCAAAAAGTATTGCTTGCTCATGGACCCGGGG
AAGGGCAGTCTCGGCCGGGATAAGGCCGAGCTTGCCCAGGATTTCTGGGGCAATTGCACCAACTGCACCCAGCATGGCGTAACGTCCGTTGATGACTTCA
CCGTAGGCTAGCCATCTGGGCTCGATGAACCCACCTGTGCCTTCTGGGTCAGAGAGGCCCAATGGATCGAATCCGAAGTCGCCAGGAAGGCTGCAAGTTA
AATTTAACCATTTCTCAAAAGTTAATTTAGGTGATGACCAAGTGCAGTGCTTTAAATTTACATTTCTTTTTGGGAGAAAATTTGTCTTATAATATGTTAT
ACATTTCGTCATGTTTATCTCTGTCATCACGGAATAAAGTCAAATACAATGCATACAAACACAATTGAATTTACAATTAGAAACAGCTAGTTTTTGTTCA
AGGAGTACTAATTATGTGAGTCACGTATATGGGCGGATGAACAATGAGTATGTGTCGTGACGGATTTTGGCCAGAAGCACAATCCAATTTTTGTAGATTT
TAATTTGCTTTTCTCTGTGTTAAATTAAGCTTATCCTCCTGCTAATTGTCAACCCTAATCCATCTCCTACGTTCTCATCTCAGTCAAATAAAAAAAACCT
AGTTCCGTCACTCAAACTACACTATATGAGTCATGACGGTGTTACAGTCATACTAAAGGGTGAGTCGAGCATTGGTACCTGCCATCCAAGTAAGAAAGGC
TCTGCTTGGAAGCAAACCACAACTGTCT