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Detailed information on CNT30611481


BLAST search results

BLAST vs Swiss-Prot:
sp|P27489|CB23_SOLLC, E-value = 6e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Arabis alpinaManihot esculenta42.9455.2979.43350forward
CNT3045167Arabis alpinaPrunus dulcis10.1823.5185.5483forward
CNT30125939Arabis alpinaPhyscomitrium patens15.4637.7281.75126forward
CNT30303822Arabis alpinaTriticum aestivum14.621.8385.71119forward
CNT30397679Arabis alpinaTriticum turgidum10.9232.0185.3989forward
CNT30173586Arabis alpinaTrifolium pratense28.3424.1679.65231forward
CNT30441391Arabis alpinaAegilops tauschii14.622.6785.71119forward
CNT30597278Arabis alpinaFraxinus excelsior30.3149.0179.35247forward
CNT30608086Arabis alpinaGossypium raimondii24.0550.1382.14196forward
CNT30217954Arabis alpinaKalanchoe fedtschenkoi10.6724.1783.9187forward
CNT30649241Arabis alpinaRosa chinensis22.9416.4381.28187forward
CNT30214152Arabis alpinaHelianthus annuus13.1324.2685.05107forward
CNT30687021Arabis alpinaTriticum urartu14.624.3484.87119forward
CNT30621314Arabis alpinaCajanus cajan42.2127.2879.94344forward
CNT30573352Arabis alpinaVitis vinifera41.9652.4579.53342forward
CNT3027741Arabis alpinaTheobroma cacao27.7351.7279.2226forward
CNT3055927Arabis alpinaAmborella trichopoda16.4430.9582.84134forward
CNT30118713Arabis alpinaCitrus clementina36.3249.1780.07296forward
CNT30329871Arabis alpinaDioscorea rotundata12.0226.4982.6598forward
CNT30150205Arabis alpinaBrachypodium distachyon12.7624.7685.58104forward
CNT3048728Arabis alpinaCucumis sativus13.1328.0882.24107forward

Expression of CNT30611481

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MGLPSSCMSLQVESHRFGTKEEQCLLESNQPFLESQGQ*

>peptide 2 (32 aa)
MKKLMVPRESKRYKIMETNIKHMKWYDHLSGT*

>peptide 3 (50 aa)
EFVLLAIDIVISYKRRICLHRVLQHEEADGTKRKQKIQDNGDQHKTHEMV*

>peptide 4 (42 aa)
MIISVELEAGQDIVVDGIRQMIKKDHLNRRNLSLTPRSTVSP*

Sequence

>CNT30611481
AGAGTTTGTTCTTTTGGCCATTGACATAGTCATTTCTTACAAAAGACGAATATGTTTACATAGGGTGTTACAGCATGAAGAAGCTGATGGTACCAAGAGA
AAGCAAAAGATACAAGATAATGGAGACCAACATAAAACACATGAAATGGTATGATCATCTCAGTGGAACTTGAGGCTGGTCAAGACATTGTTGTTGACGG
GATCCGCCAAATGATCAAGAAGGATCACCTGAACCGGCGAAACCTTTCTCTAACCCCAAGAAGTACTGTTTCCCCATAGATCCTGGGTTGTACCAGTCCT
GCAACCTCCGGTGCTCAGCAAATCCCATAAGAGCCATCTCGAGAACGAAGAGCGTGTATGGGTCTGCCCAGTAGCTGTATGTCCCTGCAGGTGGAATCAC
ACCGGTTTGGAACCAAGGAAGAGCAGTGTCTGCTGGAATCAAACCAGCCTTTCCTAGAATCTCAGGGGCAATAGCTCCAGCTGCACCCAACATAGCGAAC
CTCCCGTTGATAACCTCTCCGTAAGCTAACCATTTCGGCTCAATGAACCCTCCAGTACCCTCTGGATCAGAAAGACCAAGCGGGTCGAATCCATAGTCAC
CAGGTGGAGTTGAAGCAGCTTTGACAACAAAGGAACTCTTCCTCACGGACACAGATGGTTTTGAGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGT
AAGTGAAGAAGACACAAGTGCTTGTGCTGCCATTTTTCTCTGTTCCTTAACTCTTCTCTTCTGTCACCAAGAAATGATGATTGATGATGGTTCGGTTATG
GTCTAGAGAGAATAT