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Detailed information on CNT30145816


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30379782Medicago truncatulaManihot esculenta22.4473.7881.37467forward
CNT30526207Medicago truncatulaPhaseolus vulgaris25.5646.2284.59532forward
CNT30597278Medicago truncatulaFraxinus excelsior17.271.0379.05358forward
CNT30422640Medicago truncatulaPapaver somniferum7.437.6584.42154forward

Expression of CNT30145816

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LNYSSSCKCHFLQGHIMKHAHRMLRQESEEKVVEFFW*

>peptide 2 (47 aa)
MPFPSQRVCNCLPSSCMFPLVESRRFGTKGVLFPRELNLLCQEFQVL*

>peptide 3 (38 aa)
MNPPVPSGSESPRGSNPKSPGRLQVMMRPNKVNFILDT*

>peptide 4 (37 aa)
MLVRRNLQALSQVLRSIVFPWSQDCTNLGIFCVLQIP*

>peptide 5 (30 aa)
MHIYMLYSCVMGALLSKLMFYLGVGKKTKN*

>peptide 6 (30 aa)
MSLTSNMYEQQVITCIKKFNSFIFNYESRL*

Sequence

>CNT30145816
GCTGAATTATTCTAGTTCTTGTAAATGTCATTTCTTACAAGGCCACATCATGAAACATGCTCACAGGATGCTAAGACAAGAAAGTGAAGAAAAGGTGGTT
GAGTTTTTTTGGTAATAATTATAACTTACAACAACCAACAAGAGCAAAGAAAATAAAGGAGCATATATATAATACATTCATTTAGTGGAACTTGAGACTG
GTCAAGATGTTGTTGTTGACAGGGTCAGCCAAATGATCTAAGAGGTTTTGGTATGGTCCAACTCCTGTAACAAGAGCTTGAATAAAGTAACCCAATATTG
CCAACATTGCTAACCTTCCATTCTTAACTTCCTTCAGCTTTAATTCTTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTTTTGG
TATGGTCCAACTCCTGTAACAAGAGCTTGAATAAAGTAACCCAATATTGCCAACATTGCTAACCTTCCATTCTTAACTTCCTTCAGCTTTAATTCCTTCA
ATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCTCCAAGCCCTTTCTCAAGTCCTAAGAA
GTATTGTTTTCCCATGGAGCCAGGATTGTACCAATCTTGGAATCTTCTGTGTTCTGCAAATCCCATGAATGCCATTTCCATCACAAAGAGTGTGTAATTG
TCTGCCCAGTAGTTGTATGTTCCCGCTGGTGGAATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGGAATTAAACCTGCTTTGCCAAGAATTT
CAGGTGCTATAGCTCCGGCTGCTCCCAACATTGCAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTTGGTTCAATGAATCCACCGGTTCCTTC
GGGATCTGAAAGTCCTAGAGGGTCAAATCCAAAGTCACCCGGAAGGCTGCAAGTGATGATGAGGCCAAATAAAGTCAATTTCATACTTGACACATAGTGT
TACTCAACAAAGTTGCATGCATATCTACATGTTGTATAGTTGTGTTATGGGTGCTTTGTTATCCAAGCTTATGTTCTACCTAGGGGTGGGCAAAAAAACC
AAAAACTGAACTGAACTGAACAAAAAAAAACTGAACAATTACTAACAGTTCTGAAATTGAACTGAAACAATTCAGTTCAGTTCGAAACAGTTTAGTTCGA
TTCGAAACAGTTCAGTTCGGTAACTAAAATTTAATTTCATTTGTTTTTTTTCATATTTTTTCAAAGGCATCAATAATAACAGTTCAGTTCAGTTCGGAAC
AGTTCAGTTCGGTTTGAAACAGTTCAGTTCAGTTATTTTAAATTTAACAAACAGTTCAGTTCGATTCAGTTTTCATCCTGAACTGAACCATGTCCACCCC
TAGTTCTAACGCAATCACTTGTCTAAGTATTTGGATGAAACTATAAAGATAACTTTAAATGTGTTCACAAGTTGTCTTTAGATTATTTCCATAGGTTTTG
TAGAATAATTTATTAAAGTAAATAGTTTAATCATTTCATCTACTACTGTAAAATTAGATTAAGCATAATCATAAACGATAAATGATAATTAGTGCTTAAT
CGAAAAGATTTCGCAAAAGCCTTCTGAGATCTTAGACTCACAAAACATCTACCAGACATAGTTACCACAAGTAATATAAAAATAAAATAAAAAAAATTGG
TACTCAAAACAAGTGTTATCCAACAAACTTGCATATCTACATGTTGTAATGTTGTGTTAAGGGTACTTAGTCGTATCTAATCTGAGCTTATGGCTCAACA
CAAGCACTTGCATAAGTAATTTGTTGAGATTGCAAAATTAAGTTAAAAATATTTCATAATTACATGTCTTTAACTTCAAACATGTATGAACAACAAGTAA
TAACTTGTATAAAAAAGTTCAATAGTTTCATCTTTAATTATGAAAGTAGATTATAAATAATCATAAGCGATAATAAACACTTGATCAAAACGTTTTACTT
AGGCATACTCTAGGTTCTTAAATCTTACTCAAAAAACATCCACCTTACAATACTTTTTTCTTCAACTACAAAGGAATTTAC