Detailed information on CNT30543418


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Brassica napusArabidopsis thaliana58.6471.8290.7441forward
CNT30379782Brassica napusManihot esculenta62.173.7879.44467forward
CNT3081731Brassica napusBrassica juncea71.8180.696.3540forward
CNT30259100Brassica napusBrassica rapa46.4146.97100349forward
CNT30597278Brassica napusFraxinus excelsior54.5281.3577.8410forward
CNT30608086Brassica napusGossypium raimondii28.5954.9983.72215forward
CNT30573352Brassica napusVitis vinifera43.8850.6180.91330forward
CNT3027741Brassica napusTheobroma cacao26.4645.5479.9199forward
CNT30118713Brassica napusCitrus clementina59.7174.5879.73449forward

Expression of CNT30543418

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKPPVPSGSERPSGSNPKSPGGVDAALTTKETFLCDTDTAGFAPNICLAV*

>peptide 2 (31 aa)
MSLQVESHRFGTREEQCLQESDRPFLESQVQ*

>peptide 3 (36 aa)
MKIISVELEFQLLHRLLVFSKPKRVEEWSTGVSRVT*

Sequence

>CNT30543418
AAGACTGTAGGATACAAGAGAATGAGAGTCCAACATAAAACACATGGGATGATATGAAGATCATCTCAGTGGAACTTGAGTTTCAACTCCTTCATCGACT
TCTCGTCTTTTCCAAACCCAAGAGGGTTGAAGAATGGTCCACCGGGGTAAGCCGGGTCACCTGAACCCGCGAAACCTTTCTCTAGACCCAAGAAGTATTG
TTTACCCATAGATCCTGGGTTGTACCAGTCCTGCAACCTCCTGTGCTCGGCAAATCCCATCAAAGCCATCTCGAGAACAAAGAGTGTGTAAGGGTCTGCC
CAGTAGCTGTATGTCCCTGCAGGTGGAATCACACCGGTTTGGAACCAGGGAAGAGCAGTGTCTGCAGGAATCAGACCGGCCTTTCCTAGAATCTCAGGTG
CAATAGCTCCAGCTGCACCCAACATAGCAAACCTCCCGTTGATGATCTCTCCGTAGGCTAGCCATCTCGGCTCGATGAAGCCTCCAGTACCCTCTGGGTC
TGAAAGACCAAGCGGATCGAATCCGAAGTCGCCAGGTGGAGTTGATGCAGCCTTAACAACCAAGGAAACCTTCCTCTGTGATACGGACACAGCTGGTTTT
GCGCCGAATATCTGTCTAGCGGTCTGAACAGAGGAGGTAAGTGAAGAAGATACAAGCGCTTGTGCTGCCATTTTTTTTTGCTTAAACTCTTCTCTTCTGT
CACCAAGAGACGATGATTATTGAATAATGGTCTGCAGGGAACCTAGTGTTAA