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Detailed information on CNT30476581


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Saccharum spontaneumOryza sativa16.1448.4689.44142forward
CNT30674207Saccharum spontaneumSetaria viridis16.1436.0497.18142forward
CNT30125939Saccharum spontaneumPhyscomitrium patens13.6435.9380.83120forward
CNT30397679Saccharum spontaneumTriticum turgidum16.1451.0888.03142forward
CNT30597278Saccharum spontaneumFraxinus excelsior18.0731.5579.87159forward
CNT30210187Saccharum spontaneumHelianthus annuus20.6822.2580.22182forward
CNT3055927Saccharum spontaneumAmborella trichopoda13.7527.9486.78121forward
CNT30115627Saccharum spontaneumOryza nivara35.3418.1784.24311forward

Expression of CNT30476581

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MNHDATLQAPFHASAKPEHMNNTHLAFHYKQQAAAGIYDAPTF*

>peptide 2 (51 aa)
MLSCASPLDAHRVHACSFLLHIHPLVHPQLDAHGACALKSNFSASREGIVH*

>peptide 3 (30 aa)
MLFPATHTSPCASTIGCPWGMCPEEQFFGV*

>peptide 4 (42 aa)
MTPVLNHGSAVSGGMMPSLPKTSGAMAPAAPSMAKRPLITSP*

>peptide 5 (29 aa)
MHIEYMHALSCYTYIPLCIHNWMPMGHVP*

Sequence

>CNT30476581
TGGGTTAATTAGCACCATGAATTGATATGATGAAACCTTGCTCTTTCACTATCTGTAAATATTGACAATAGAACAACAGGGAAGGTAATGTTTTTGTCTC
TAAGCACACATGCTCTCATGTGCATCACCATTGGATGCACATAGAGTACATGCATGCTCTTTCCTGCTACACATACATCCCCTTGTGCATCCACAATTGG
ATGCCCATGGGGCATGTGCCCTGAAGAGCAATTTTTCGGCGTCTAGGGAGGGAATTGTACATTGATTTACCATGTGCAATACAGTTTCTGGTCTCAACAA
GATCAATACTAATTTGTTACAAGCAGCAGGCTGGGCATGAATCATGATGCAACGCTTCAGGCTCCTTTCCATGCATCAGCCAAGCCAGAGCATATGAACA
ACACGCATCTCGCTTTCCACTACAAACAACAGGCAGCAGCAGGTATATATGATGCACCAACATTCTAGTGGAACTTGAGCTCATTCATCTCCTTCTCGGT
CTTGCCGAAGCCGAGCGGGTTGAAGAGGGGCCCGCCGGGGTAGGACGGGTCGCCGGAGCCGGCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCTTGCCC
ATGGAGCCCGGGTTGTACCAGTCCTGGAGGCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATGTTGAAGACGAAGAGCGTGTAGGAGTCGGCCCAGTAGT
TGTAGGTGCCCGCGGGAGGGATGACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGGCGGGATGATGCCCAGCTTGCCGAAGACCTCCGGCGCGATGGC
GCCCGCCGCGCCCAGCATGGCGAAGCGCCCGTTGATCACCTCGCCGTAGGCCAGCCACTTGGGCTCGATGAAGCCGCCGG