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Detailed information on CNT30359247


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-90

BLAST vs NONCODE:
NONBRAT004778, E-value = 1e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Lactuca sativaArabidopsis thaliana43.8260.180.22369forward
CNT30281438Lactuca sativaChenopodium quinoa39.0729.0179.64329forward
CNT30526207Lactuca sativaPhaseolus vulgaris53.3339.0179.06449forward
CNT30711417Lactuca sativaGlycine max51.924.4178.95437forward
CNT3085597Lactuca sativaVigna radiata51.931.6780.09437forward
CNT30540898Lactuca sativaBrassica napus44.367.0980.43373forward
CNT30238557Lactuca sativaBrassica oleracea31.9540.9482.53269forward
CNT30145845Lactuca sativaMedicago truncatula40.0260.0780.71337forward
CNT3060116Lactuca sativaArabidopsis lyrata3866.9579.06320forward
CNT3077678Lactuca sativaBrassica juncea44.360.8580.43373forward
CNT30264551Lactuca sativaBrassica rapa44.348.3880.43373forward
CNT30597278Lactuca sativaFraxinus excelsior33.6156.1582.69283forward
CNT30214152Lactuca sativaHelianthus annuus39.0774.686.93329forward
CNT30573352Lactuca sativaVitis vinifera28.1536.3583.97237forward
CNT30329767Lactuca sativaDioscorea rotundata39.0753.7680.24329forward
CNT30725700Lactuca sativaLupinus angustifolius59.6256.0978.49502forward

Expression of CNT30359247

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MTPVLNQGRAVSGGMSPSLPKISGAMAPAAPNMAKRPLITSPYASHLGKREIAWMQTTTVC*

>peptide 2 (36 aa)
MIKLTHKYEEEHIITPKTHVIKHHLTTIDLILCSNI*

>peptide 3 (46 aa)
MPGHPTLKNLSPTPRSIASPLTLGYTSLGVFYALRNPSTPFPIQIG*

Sequence

>CNT30359247
CCCCGGTCACCAAACCCTGAATGAAGTAACCCAAGATTGCTAACATAGCCAATCTTCCATTCTTGATTTCTTTTAGCTTCAGTTCCTTCATTGACTTCTC
ATCTTTCCCGAACCCGAGTGGGTTAAAGAACGGCCCACCTGGGTATGCCGGGTCACCCGACCCTGAAAAACCTTTCTCCAACCCCAAGAAGTATTGCTTC
CCCATTGACCCTGGGTTATACCAGTCTTGGAGTCTTCTATGCTCTGCGAAACCCATCAACGCCATTTCCAATACAAATAGGGTGAAAGGGTCTGCCCAGT
AGTTGTATGTTCCGGCTGGGGGAATGACACCGGTCTTGAACCAAGGGAGGGCGGTTTCCGGTGGGATGAGCCCAAGCTTGCCGAAGATCTCTGGTGCAAT
GGCGCCAGCTGCACCCAACATGGCGAAACGTCCATTGATAACCTCGCCGTATGCTAGCCACTTGGGTAAGAGAGAGATTGCTTGGATGCAAACCACAACT
GTCTGTTAGCTCCTTGCTGGTAGACATACGATAACCCATCAAGTCATGATCAAACTCACACACAAATATGAGGAAGAACACATCATAACACCAAAAACCC
ATGTCATAAAACATCATTTGACAACAATCGATCTAATTTTATGCAGTAATATATAGGAGAAAAGGGTACCTTAACAGGAGGGGTGGAAGCAGCTTTGACA
ACAAAGGAGACCTTTCTTGAAGATGTTGTGTGAAGTGGCCTGGCTGCTAGGATTTGCCTAGCAGACTCCACGGAGGAGGTGAGCGAAGACGATGAGACCA
AAGCCTGTGTAGCCATTTTCCTTGAGAAGATTAGATGATCGT