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Detailed information on CNT30340478


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 5e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674207Eragrostis tefSetaria viridis16.6935.7994.33141forward
CNT3045167Eragrostis tefPrunus dulcis25.4460.9181.4215forward
CNT30441596Eragrostis tefAegilops tauschii57.7566.385.25488forward
CNT30597278Eragrostis tefFraxinus excelsior18.8231.5579.87159forward
CNT30474763Eragrostis tefSaccharum spontaneum57.9956.0691.43490forward
CNT30140296Eragrostis tefLolium perenne57.8750.4184.66489forward
CNT30573352Eragrostis tefVitis vinifera36.5747.3978.96309forward
CNT30583144Eragrostis tefEchinochloa crusgalli52.5438.6491.89444forward
CNT30557526Eragrostis tefPanicum hallii51.0147.2691.65431forward

Expression of CNT30340478

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MQCLKRFTIISQREPTHTSRRSIAPTGSS*

>peptide 2 (72 aa)
MTPVLNHGSAVSAGIRPSLPNTSGAMAPAAPSIAKRPLITSPYASHLGSMKPPVPSGSDRPNGSKPKSPGSLQ

>peptide 3 (89 aa)
MLRRSNTGEEELYINLPCAIQYPVSTRRSIVIMLQAAGWRCMNRDAVPQTLHHHQPARTNTHISSLNCTDGQQLATQRARKKGSTAQSF*

Sequence

>CNT30340478
GTCGAAGTAATTGTTCGCAATGTTGAGACGTAGTAACACGGGGGAGGAGGAATTGTACATTAATTTACCATGTGCAATACAATATCCGGTCTCAACAAGA
CGATCAATTGTTATAATGTTACAGGCAGCAGGCTGGCGATGCATGAATCGTGATGCAGTGCCTCAAACGCTTCACCATCATCAGCCAGCGCGAACCAACA
CACACATCTCGTCGCTCAATTGCACCGACGGGCAGCAGCTAGCAACGCAACGGGCTAGAAAGAAAGGCAGTACAGCGCAATCTTTCTAGTGGAACTTGAG
GCTGGTGAGCACGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGAGCAGGTTCTGCCTGCCGTTCTTGATCTCCTTGAGCTTGAGCTCCTTGAGCGACTTC
TCGTCCTTGCCGAATCCGAGCGGGTTGAAGATCGGGCCGCCGGGGTAGGCCGGGTCGCCGGAGCCGCCGAGGAACTTCTCGAGGCCGAGGAAGTACTGCT
TGCCCATGGACCCCGGGTTGTACCAGTCCTGCAGCCGGCGGTGCTCGGCGAAGCCCATGAGCGCCATCTCGAAGACGAAGAGCGTGTAGGGGTCGGCCCA
GTAGTTGTAAGTGCCGGCCGGCGGGATGACGCCCGTCTTGAACCACGGCAGCGCCGTCTCCGCCGGGATCAGGCCCAGCTTGCCGAACACCTCCGGCGCG
ATGGCGCCCGCCGCGCCAAGCATCGCGAAACGCCCGTTGATCACCTCCCCGTACGCCAGCCACTTGGGCTCGATGAAACCGCCGGTGCCCTCTGGGTCCG
ACAGGCCCAACGGGTCGAAGCCGAAGTCGCCGGGCAGCCTGCAAC