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Detailed information on CNT30487770


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 2e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Olea europaeaOryza sativa28.613.8681.4129forward
CNT30675941Olea europaeaSetaria viridis39.9128.8981.11180forward
CNT30523309Olea europaeaSetaria italica35.0313.4981.65158forward
CNT30513114Olea europaeaJuglans regia24.8338.7588.39112forward
CNT30270368Olea europaeaChenopodium quinoa42.3536.5279.58191forward
CNT30728535Olea europaeaCorchorus capsularis25.0632.7585.84113forward
CNT30381598Olea europaeaManihot esculenta52.5542.6382.28237forward
CNT30526306Olea europaeaPhaseolus vulgaris5124.5581.3230forward
CNT30708850Olea europaeaGlycine max51.6629.4284.12233forward
CNT30300292Olea europaeaTriticum aestivum19.7334.6383.1589forward
CNT30224179Olea europaeaHordeum vulgare19.7321.0983.1589forward
CNT30564637Olea europaeaActinidia chinensis57.8722.9179.69261forward
CNT3084615Olea europaeaVigna radiata51.6620.1982.4233forward
CNT30554639Olea europaeaOryza glaberrima28.648.6881.4129forward
CNT30171733Olea europaeaTrifolium pratense50.3332.4381.5227forward
CNT30144644Olea europaeaMedicago truncatula59.6570.9882.53269forward
CNT30138628Olea europaeaLolium perenne23.0622.0882.69104forward
CNT30605371Olea europaeaGossypium raimondii22.3939.7683.17101forward
CNT30205828Olea europaeaHelianthus annuus38.1444.6886.63172forward
CNT30626732Olea europaeaDaucus carota59.6521.4983.64269forward
CNT30596737Olea europaeaOryza meridionalis28.621.2280.62129forward
CNT30356968Olea europaeaLactuca sativa59.4230.9882.84268forward
CNT30370946Olea europaeaOryza glumipatula28.610.4381.4129forward
CNT30414433Olea europaeaPapaver somniferum51.8818.8781.62234forward
CNT30573808Olea europaeaVitis vinifera52.1136.9583.83235forward
CNT30102823Olea europaeaOryza rufipogon28.614.3381.4129forward
CNT30577292Olea europaeaOryza barthii28.611.6281.4129forward
CNT30117373Olea europaeaOryza nivara28.68.2481.4129forward
CNT30604528Olea europaeaOryza punctata29.7111.7381.34134forward

Expression of CNT30487770

Peptides detected in this lncRNA

>peptide 1 (45 aa)
RRLCHLSSLYIKGSLFTNTDQIRVNITYKKDDISFHLISSPICKN*

>peptide 2 (57 aa)
MNSITKRVEDEAKYSDLPASYHLGTLMMPMLVKTSGNSIPATPNIAHLLFTSSAWTNH

Sequence

>CNT30487770
GAGGAGACTATGCCATTTGAGTTCCCTGTACATTAAAGGCTCCTTGTTTACAAATACAGATCAAATCAGGGTCAATATTACATATAAGAAAGATGATATT
TCATTTCATTTAATTTCATCTCCAATATGTAAAAATTAACCGCCGAATGTCTGGACAATTGTGTTGTGCCATGGGTCTGAGAGGCAAGCTGTAGTTCTTG
AAAATGGGATCTTGGTTAACACTTCCGGGGTTCTTGATGTCTTGCCACCTTCTGATCTCGACGTAGTGAAACAAAATGAACTCGATCACCAAAAGGGTCG
AGGACGAGGCAAAGTATTCGGATTTGCCAGCATCGTACCATTTGGGAACATTAATGATGCCAATGTTGGTGAAAACTTCAGGCAACAGCATCCCAGCAAC
ACCCAACATTGCCCACCTGCTATTTACTAGCTCTGCCTGGACAAACCATTT