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Detailed information on CNT30596737


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Oryza meridionalisOryza sativa66.9443.7296.56407forward
CNT30675792Oryza meridionalisSetaria viridis29.7725.9794.48181forward
CNT30523309Oryza meridionalisSetaria italica29.7715.4694.48181forward
CNT30513114Oryza meridionalisJuglans regia16.6134.9584.16101forward
CNT30728535Oryza meridionalisCorchorus capsularis15.7927.8382.2996forward
CNT30487770Oryza meridionalisOlea europaea21.2228.680.62129forward
CNT30709355Oryza meridionalisGlycine max35.6931.1882.49217forward
CNT30300292Oryza meridionalisTriticum aestivum30.2671.694.57184forward
CNT30224179Oryza meridionalisHordeum vulgare15.1321.891.392forward
CNT30395365Oryza meridionalisTriticum turgidum15.1333.792.3992forward
CNT30564637Oryza meridionalisActinidia chinensis26.4814.1487.58161forward
CNT30591239Oryza meridionalisMusa acuminata12.6627.585.7177forward
CNT30554731Oryza meridionalisOryza glaberrima68.2628.9696.63415forward
CNT30138628Oryza meridionalisLolium perenne26.8134.6193.25163forward
CNT30205828Oryza meridionalisHelianthus annuus14.1422.3486.0586forward
CNT30626732Oryza meridionalisDaucus carota21.0510.2286.72128forward
CNT30684486Oryza meridionalisTriticum urartu12.535.5197.3776forward
CNT30370926Oryza meridionalisOryza glumipatula68.2633.7796.87415forward
CNT30102863Oryza meridionalisOryza rufipogon63.4938.3796.63386forward
CNT30577292Oryza meridionalisOryza barthii67.1136.7696.32408forward
CNT30604528Oryza meridionalisOryza punctata30.5916.2996.77186forward

Expression of CNT30596737

Peptides detected in this lncRNA

>peptide 1 (51 aa)
TPQKKEEEKRREHLPSPNHRFHQPAELSSSSLRCPGHEIHRSHTLSLTASG*

>peptide 2 (37 aa)
YSTKKRRRKKKRTSSIAQSSVSPACRTLIKLFEMPWP*

>peptide 3 (32 aa)
ILHKKKKKKKEENIFHRPIIGFTSLQNSHQAL*

Sequence

>CNT30596737
ATACTCCACAAAAAAAAGAAGAAGAAAAAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGCAGAACTCTCATCAAGCTCTTTGAG
ATGCCCTGGCCATGAAATACATCGATCACACACTCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGTTGAG
GGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGTGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCC
TGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCTATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGGGGAAGGGAGGCCGGGGAGCC
ACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGCGAGGCGGGTGGAGGATTGCCCCAGGAAGGTAGACTTGAGCGACGTCGA
TGGGCGGAGGGCCGCGACGGGGGCGCGGGCGGTGACGGACGCCATTGCCTAGCTTCCCTGGCTTAGAGAGGGGAGGAAGCGAAGTGGGTGTAGTCACAAG
GGTACGTT