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Detailed information on CNT30117373


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 1e-94

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Oryza nivaraOryza sativa54.6384.0797.54855forward
CNT30675792Oryza nivaraSetaria viridis22.4350.3693.16351forward
CNT30523568Oryza nivaraSetaria italica24.5436.4793.75384forward
CNT30513114Oryza nivaraJuglans regia6.4534.9585.15101forward
CNT30487770Oryza nivaraOlea europaea8.2428.681.4129forward
CNT30300839Oryza nivaraTriticum aestivum24.8636.4691.52389forward
CNT30224179Oryza nivaraHordeum vulgare7.3527.2592.17115forward
CNT30395365Oryza nivaraTriticum turgidum15.1486.8190.72237forward
CNT30591239Oryza nivaraMusa acuminata11.8266.0787.03185forward
CNT30554731Oryza nivaraOryza glaberrima39.2342.8595.93614forward
CNT30138628Oryza nivaraLolium perenne11.0536.7393.64173forward
CNT308181Oryza nivaraZea mays11.8833.8891.4186forward
CNT30205828Oryza nivaraHelianthus annuus5.522.3487.2186forward
CNT30685421Oryza nivaraTriticum urartu11.8277.7389.73185forward
CNT30347972Oryza nivaraEragrostis tef10.4220.0795.71163forward
CNT30596727Oryza nivaraOryza meridionalis29.0195.3889.65454forward
CNT30370931Oryza nivaraOryza glumipatula61.8556.0897.52968forward
CNT30573808Oryza nivaraVitis vinifera16.6841.0480.08261forward
CNT3038035Oryza nivaraCucumis melo9.7130.8381.58152forward
CNT30102887Oryza nivaraOryza rufipogon54.25101.3197.41849forward
CNT30577292Oryza nivaraOryza barthii28.1839.7399.09441forward
CNT30604463Oryza nivaraOryza punctata24.4132.5797.38382forward

Expression of CNT30117373

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLSSPQFINILYMHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 2 (49 aa)
MRCWVGVANGRRRLLSSVIRMRGYGGIKGRVSIGWRSQLWLVAAATSDG*

>peptide 3 (51 aa)
MMVLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 4 (30 aa)
MHAGNNYHNTHSKSESHHIHLSLSLLPPIH*

>peptide 5 (49 aa)
MGGVASYPALSGCGDTGESKGGFLLDGGLSCGWLLLPRRTGEMVGADRSE

>peptide 6 (35 aa)
MASFHCMLLFFSSDILIESYRWRAPSPWPRGWARS*

Sequence

>CNT30117373
TCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAG
AACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGC
ATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACA
TGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGAT
GCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGG
AACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCT
TCTGATATATTGATAGAATCGTACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCC
GCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGG
AACAGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCG
TCAGCACCTCCGGCAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTC
CGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTACACACCCGTTTAACTATCGTGTTAGTAGTTTTTTATGATGCTCTCTACTGATAGT
AGAAATATATTTTTTTATGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGGACGCCATGGCTT
AGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTC
CGGGAGTGGCCGGCGCTGCCAGGTGGCCACGGTGGCGAGGGCGGCGACGGACGGCGGAGATCGGCGGTGGGGGTGGATCGGACGGCCAGGATGCGTTGTT
GGGTGGGTGTGGCCAATGGGAGGCGTCGCCTCTTATCCAGCGTTATCCGGATGCGGGGATACGGGGGAATCAAAGGGAGGGTTTCTATTGGATGGAGGTC
TCAGCTGTGGCTGGTTGCTGCTGCCACGTCGGACGGGTGAGATGGTTGGTGCAGATCGCTCGGAG