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Detailed information on CNT30171733


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-66

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513114Trifolium pratenseJuglans regia32.5778.8981.58228forward
CNT30270368Trifolium pratenseChenopodium quinoa19.5726.285.4137forward
CNT30728535Trifolium pratenseCorchorus capsularis18.7137.9786.26131forward
CNT30381598Trifolium pratenseManihot esculenta40.7151.2685.26285forward
CNT30526306Trifolium pratensePhaseolus vulgaris47.2935.3384.59331forward
CNT30487770Trifolium pratenseOlea europaea32.4350.3381.5227forward
CNT30708773Trifolium pratenseGlycine max44.2949.3681.94310forward
CNT3084615Trifolium pratenseVigna radiata3320.0287.45231forward
CNT30144863Trifolium pratenseMedicago truncatula40.4328.596.47283forward
CNT30208094Trifolium pratenseHelianthus annuus26.4377.7381.62185forward
CNT30626732Trifolium pratenseDaucus carota35.4319.8179.84248forward
CNT30621375Trifolium pratenseCajanus cajan21.4329.4182150forward
CNT30358059Trifolium pratenseLactuca sativa2214.4982.47154forward
CNT30414433Trifolium pratensePapaver somniferum3821.4581.95266forward
CNT30573808Trifolium pratenseVitis vinifera30.8633.9681.02216forward
CNT30723301Trifolium pratenseLupinus angustifolius45.5774.7180.56319forward

Expression of CNT30171733

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVAMTKKKKKRVKMEDENVVDGFVLRMSMAYEEHSCG

>peptide 2 (78 aa)
MNSITKSVDDEAKYSSFPASYHFGTLMIPMLVKTSGSNIPATPNMAKPGNHSPFLAKTLKEAEGEHLTGLKATSLFNL*

Sequence

>CNT30171733
CTGACTCGATAAAAAAGAGTTTTAAGCAATATTTAAGCTATAACTAGAAAGTAAAAAGCATTTACCATTGGCAATTTCCTTCTCTTTAGCTTCCAAAGTT
GGTGCAAAGTTCAAAGGGTTAAAAATTCCACCAGGGTAACCAACCTCACCCTTTGGCAAGCTGTATTGCTTAAAGATAGGATCTTGGTTAACGCTACCAG
GGTTCTTAATGTCTTGCCATCTTCTAATCTCAACATAATGGAACAAAATGAACTCAATCACAAAGAGTGTTGATGATGAAGCAAAGTATTCTTCTTTCCC
TGCATCATACCATTTTGGAACATTGATGATTCCAATGCTGGTTAAGACCTCAGGAAGTAACATCCCTGCAACACCTAACATGGCCAAGCCAGGCAACCAC
TCTCCTTTCTTGGCAAAAACCTTAAAAGAAGCAGAAGGTGAACACTTAACTGGCCTAAAAGCCACTTCTCTATTCAATTTATAACCAGAAGAACCGGCAA
GAAACCTCGATTTCAAACCGCATGGCCGGAAAATGGCAGCCGAAGCCTGTGTAGTAACAGTGGCCATGATCAACTACTACTAATAATAATGGTAGCAATG
ACAAAGAAGAAAAAAAAAAGAGTGAAAATGGAAGATGAAAATGTTGTTGATGGTTTTGTTTTGAGAATGAGTATGGCTTATGAGGAGCATTCATGTGGTT