CANTATAdb - search

Detailed information on CNT30102823

BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30513114	Oryza rufipogon	Juglans regia	11.22	34.95	85.15	101	forward
CNT30728535	Oryza rufipogon	Corchorus capsularis	10.67	27.83	82.29	96	forward
CNT30487770	Oryza rufipogon	Olea europaea	14.33	28.6	81.4	129	forward
CNT30205828	Oryza rufipogon	Helianthus annuus	9.56	22.34	87.21	86	forward
CNT30584554	Oryza rufipogon	Echinochloa crusgalli	7.33	30.7	92.42	66	forward

Expression of CNT30102823

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 2 (37 aa)
MHTPQKKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 3 (34 aa)
MHPDSCMQETITTTHTVSLNLITSISLSLLPPIH*

Sequence

>CNT30102823
TGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAG
CTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATTC
ATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATA
CATGCATACTCCACAAAAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAG
ATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGACGCTGCCGGGGTAGCCGCA
CTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAAC
AGGATGAACTCGATGACGAACAGCGTCGACGACGACGCGAAGTAGGTGGCCTTGCCGGCGTCGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCT
TGGCCTCCGCCCGAACATTACGTCTCGTAGTCGGTGCGCGGGCGAGGCGGGTGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAG
GGCTGCCACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTT