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Detailed information on CNT30370946


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 3e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513114Oryza glumipatulaJuglans regia8.1634.9585.15101forward
CNT30728535Oryza glumipatulaCorchorus capsularis7.7627.8382.2996forward
CNT30487770Oryza glumipatulaOlea europaea10.4328.681.4129forward
CNT30224179Oryza glumipatulaHordeum vulgare9.327.2592.17115forward
CNT30138628Oryza glumipatulaLolium perenne13.9936.7393.64173forward
CNT30205828Oryza glumipatulaHelianthus annuus6.9522.3487.2186forward
CNT30684486Oryza glumipatulaTriticum urartu9.353.7494.78115forward
CNT30347972Oryza glumipatulaEragrostis tef13.1820.0795.71163forward
CNT30596727Oryza glumipatulaOryza meridionalis32.3484.0393400forward
CNT30150529Oryza glumipatulaBrachypodium distachyon9.9430.5284.55123forward
CNT30102863Oryza glumipatulaOryza rufipogon45.8456.3699.47567forward
CNT30584554Oryza glumipatulaEchinochloa crusgalli5.3430.792.4266forward
CNT30604528Oryza glumipatulaOryza punctata27.6529.9597.08342forward

Expression of CNT30370946

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 2 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 3 (34 aa)
MLLRVLVRIVPLASSFSLASRVGSKLRGLKTLPG*

>peptide 4 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 5 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

Sequence

>CNT30370946
CTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAACCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGA
TAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGA
TCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTT
ATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTT
GAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGATCAGACAGGTGCTGCAGCAGGTTGT
CGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAATTCAGAA
CAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTCTGATATATTGACGTGCAATGCTTTTACGTGTTTTGGTTAGAATCGTACCGTTGGCGAGCT
CCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGAT
GGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGAC
GACGCGAAGTAGGTGGCCTTGCCGGCGTCGTACCACTGCGGCGCGTCGATCAACCCGATCTTCGTCAGCACCTCCGGCAGCAGCATCCCGGCCACCCCCA
GCATCGCCCACCGCCCGTTCTCCGGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACAGACGCCATGGCTTAGCTT
CCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCGGGA
GTGGCCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGC