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Detailed information on CNT30270368


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675752Chenopodium quinoaSetaria viridis46.4641.8279.42243forward
CNT30523687Chenopodium quinoaSetaria italica46.4634.3779.42243forward
CNT30513114Chenopodium quinoaJuglans regia14.1525.6191.8974forward
CNT30728535Chenopodium quinoaCorchorus capsularis16.4424.9387.2186forward
CNT30381598Chenopodium quinoaManihot esculenta39.3937.0579.61206forward
CNT30526306Chenopodium quinoaPhaseolus vulgaris46.8526.1581.63245forward
CNT30487770Chenopodium quinoaOlea europaea36.5242.3579.58191forward
CNT30708791Chenopodium quinoaGlycine max47.0433.5684.96246forward
CNT30300292Chenopodium quinoaTriticum aestivum17.0234.6384.2789forward
CNT3084615Chenopodium quinoaVigna radiata46.8521.2382.04245forward
CNT30171733Chenopodium quinoaTrifolium pratense26.219.5785.4137forward
CNT30144644Chenopodium quinoaMedicago truncatula46.2763.8582.64242forward
CNT30605371Chenopodium quinoaGossypium raimondii14.3429.5385.3375forward
CNT30208094Chenopodium quinoaHelianthus annuus29.0663.8784.87152forward
CNT30626732Chenopodium quinoaDaucus carota46.8519.5781.63245forward
CNT30685421Chenopodium quinoaTriticum urartu12.4327.3186.1565forward
CNT30358059Chenopodium quinoaLactuca sativa46.2722.7781.82242forward
CNT30414433Chenopodium quinoaPapaver somniferum39.9616.8580.86209forward
CNT30573808Chenopodium quinoaVitis vinifera21.6117.7788.5113forward
CNT3038035Chenopodium quinoaCucumis melo30.432.2582.39159forward
CNT30103189Chenopodium quinoaOryza rufipogon15.8735.7885.5483forward

Expression of CNT30270368

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MNSITNKVDDEAKYSDFPASYHFGTLMIPILVNTSGSSIPATPSIAHRPFTSSACTNHLKFSGSS

>peptide 2 (33 aa)
KNETYKDQLDFDKYFHQITSNSSPTSLSNCIFS*

Sequence

>CNT30270368
CAAAAATGAAACATACAAAGATCAGCTCGATTTTGACAAATATTTCCATCAGATTACCTCAAACTCTAGTCCTACTTCGCTAAGCAACTGCATATTTAGC
TAAAACAGCCACTTACAAGGCCTAGTCTAAGTCCCACAAATCGACTAACTGAAAAGAGAACGAAAAACAGATGCATATTGCAAGCATTAGAAGAGGAAAA
AGGCTATACCATTAGCAAGCTCCTTCTCCTTGGCCTCAAGAGTAGGTGCAAAGTTAAGAGGGTTGAATATACCACCAGGGGTTCTTGATGTCCTGCCATC
TCCTAATCTCGACATAGTGGAATAAGATGAACTCGATCACAAACAAGGTTGATGATGAGGCGAAGTACTCTGACTTCCCTGCATCATACCATTTTGGTAC
GTTGATGATACCAATACTTGTGAACACCTCTGGTAGCAGCATACCGGCAACTCCAAGCATTGCCCACCGCCCATTCACTAGCTCGGCTTGCACGAACCAC
CTCAAGTTCTCTGGGTCCTCAGC