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Detailed information on CNT30675941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30487770Setaria viridisOlea europaea28.8939.9181.11180forward

Expression of CNT30675941

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRGMERKSTFVLAGRSSQGLY

>peptide 2 (62 aa)
MYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRFNVCPPVPISPPNW*

>peptide 3 (38 aa)
ILIKQSLPLTTLVINVHTNHPSVLTLLTMHTALLQHSP*

>peptide 4 (36 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRL*

Sequence

>CNT30675941
AGATACTGATCAAACAATCTCTACCCTTAACCACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATT
ATTACAACACAGTCCTTAATCTCCTCTCCGGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTTTCAATGTATG
TCCTCCTGTCCCCATCAGCCCACCAAATTGGTGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGCT
GTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACG
AACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCACTGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCA
TCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGAGGAATGGAGAGGAAGAGCACGTTCGTTTTAGCCGG
CAGGAGCAGCCAAGGTTTGTATT