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Detailed information on CNT30626732


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675792Daucus carotaSetaria viridis12.1421.8184.87152forward
CNT30523687Daucus carotaSetaria italica12.1421.584.87152forward
CNT30513114Daucus carotaJuglans regia9.1939.7989.57115forward
CNT30270368Daucus carotaChenopodium quinoa19.5746.8581.63245forward
CNT30728535Daucus carotaCorchorus capsularis13.5849.2882.35170forward
CNT30381598Daucus carotaManihot esculenta26.0458.6382.52326forward
CNT30526306Daucus carotaPhaseolus vulgaris22.0429.4682.25276forward
CNT30631290Daucus carotaVigna unguiculata5.8322.684.9373forward
CNT30487770Daucus carotaOlea europaea21.4959.6583.64269forward
CNT30506853Daucus carotaNicotiana attenuata5.4321.5285.2968forward
CNT30708791Daucus carotaGlycine max21.8137.2485.71273forward
CNT30300292Daucus carotaTriticum aestivum8.5541.6385.98107forward
CNT30395365Daucus carotaTriticum turgidum5.1923.8187.6965forward
CNT3084615Daucus carotaVigna radiata25.1627.382.54315forward
CNT30554639Daucus carotaOryza glaberrima10.2248.387.5128forward
CNT30171733Daucus carotaTrifolium pratense19.8135.4379.84248forward
CNT30144644Daucus carotaMedicago truncatula26.5287.681.33332forward
CNT30138628Daucus carotaLolium perenne8.3122.0886.54104forward
CNT30605371Daucus carotaGossypium raimondii5.9129.1385.1474forward
CNT30205828Daucus carotaHelianthus annuus15.7351.1784.77197forward
CNT30596737Daucus carotaOryza meridionalis10.2221.0586.72128forward
CNT30358059Daucus carotaLactuca sativa23.0827.1981.66289forward
CNT30414433Daucus carotaPapaver somniferum32.5132.8282.06407forward
CNT30573808Daucus carotaVitis vinifera26.251.5782.32328forward
CNT3038035Daucus carotaCucumis melo12.2231.0380.39153forward
CNT30103189Daucus carotaOryza rufipogon7.3539.6688.0492forward
CNT30723301Daucus carotaLupinus angustifolius9.8228.8182.93123forward

Expression of CNT30626732

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MNSITNRVDDDAKYSDFPASYHSGALIRPILVKTSGSSIPATPNIAHRPLTSSA*

>peptide 2 (38 aa)
MLNYGLGERRLGDLPLASSFSLASSVAAKFRGLKIPPG*

>peptide 3 (34 aa)
MGQLGAAEGSRMVLFRSHCVEPQTLRMPTLPVFL*

Sequence

>CNT30626732
CTACGATAGACAAGATATAGCAACAACCGTTGGAGACATGATTTTAGTTTAGCATTAAAAATCACTTTCTGTAACTAAATTATAGCAATAACTCTGTTTA
TTTTATCACAACCATTGGACTTGCTTGTAGAAAAATATTGCAATCTTACTTCTGTACATTGAAACTAAAGGTACGCAATAAAGCAAATTTTCGGTCAAAA
ATCATGTATTCATGGTTTACAATACAAATGAACATGATTTTTTTCTTAAATCGACTCTTGTCCGGAGATTTTAGCCTATGGTGAGCCGCTGAAAGTTTGA
ACAATTGTGTTGTGCCATGGGTCAGCTAGGTGCTGCTGAAGGTTCTCGAATGGTCCTTTTCCGGTCACATTGTGTTGAACCACAAACCCTAAGAATGCCA
ACATTGCCAGTCTTCCTGTAAAATTTGTAACACATGAATTAGTTCCTAGTTCATGAATGCAAATTAGATTTGCTAGATGTTAAACTATGGTTTAGGAGAA
AGGAGACTTGGTGACTTACCATTGGCAAGCTCTTTCTCTTTAGCCTCTTCAGTAGCCGCGAAATTCAGAGGGTTGAAGATACCGCCTGGGTAACCAACTT
CACCTGGTGGCAAACTGTAGCTCTTGAAGATGGGATCCTGATTTACGCTTCCAGGGTTCTTGATGTCTTGCCACCTCCTGATCTCTACATAGTGGAACAA
GATGAACTCGATCACGAACAGGGTCGATGACGATGCAAAGTACTCGGATTTTCCAGCATCGTACCATTCCGGAGCATTGATCAGACCAATCTTGGTGAAA
ACCTCAGGTAGTAGCATTCCAGCAACTCCTAACATAGCCCATCGTCCGTTAACAAGCTCTGCCTGAACGAACCATTTCAAGTTCTCGGGGTCCTCAGCTA
GCGCCAAAGGATCAAATCCATTGTCACCTGGAAGACTGAATGAAGAAACAAAGATAACCAGGGGAAGCTAGGCCAGGTAGCCACTGGCCTTTCTTGGCTT
CAACTTTGAATGAGCCTGAAGCCACCGGCTTGAACGAGACCTCACGGGTTAATCTCCCCGATGATCCGGTGAGGAACCTCGTCTTCGAGGCACACGGCCT
GATACCGGCTACCGAAGCTTGGGTGGTGACTGCAGCCATAATTGTTTTCTCAGATTAAGAATGTAGTATTCTGCTGGTGCTCTCAGTGTATGCCCTTGTA
GCCATTTTGTACTTCATTTTAAAACCATATTCGTGGCTTTGGTTCAATGAAA