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Detailed information on CNT30381598


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 6e-85

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523236Manihot esculentaSetaria italica12.0527.3588.0667forward
CNT30513114Manihot esculentaJuglans regia38.1373.3687.26212forward
CNT30375998Manihot esculentaArabidopsis thaliana13.3121.9686.4974forward
CNT30270368Manihot esculentaChenopodium quinoa37.0539.3979.61206forward
CNT30728535Manihot esculentaCorchorus capsularis37.9561.1687.2211forward
CNT30526306Manihot esculentaPhaseolus vulgaris59.1735.1184.5329forward
CNT30487770Manihot esculentaOlea europaea42.6352.5582.28237forward
CNT30708773Manihot esculentaGlycine max67.6359.8785.11376forward
CNT30564637Manihot esculentaActinidia chinensis26.2612.8284.93146forward
CNT30591239Manihot esculentaMusa acuminata21.442.584.87119forward
CNT3084615Manihot esculentaVigna radiata67.6332.5885.37376forward
CNT30554639Manihot esculentaOryza glaberrima17.2736.2384.3896forward
CNT30171733Manihot esculentaTrifolium pratense51.2640.7185.26285forward
CNT30144644Manihot esculentaMedicago truncatula63.1392.6183.19351forward
CNT30138628Manihot esculentaLolium perenne20.3223.9982.3113forward
CNT30605371Manihot esculentaGossypium raimondii19.642.9184.4109forward
CNT30205828Manihot esculentaHelianthus annuus37.4154.0382.69208forward
CNT30626732Manihot esculentaDaucus carota58.6326.0482.52326forward
CNT30621375Manihot esculentaCajanus cajan35.9739.2285.5200forward
CNT30358059Manihot esculentaLactuca sativa48.9225.5981.99272forward
CNT30414433Manihot esculentaPapaver somniferum62.2327.981.5346forward
CNT30573808Manihot esculentaVitis vinifera64.9356.7682.83361forward
CNT3038035Manihot esculentaCucumis melo22.4825.3581.6125forward
CNT30723301Manihot esculentaLupinus angustifolius35.9746.8482.5200forward

Expression of CNT30381598

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTPILVKTSGNSIPATPNIAHRPFTSSAWMYHFRFSGSSASP

>peptide 2 (32 aa)
LEVPLFYIDAQTSLKNHILMVTKARNRTPFLP*

>peptide 3 (92 aa)
MNFSSLLAFEQLCCAMGLRGAARGYQMLLLLGLESWCKVEGVKNTTRVTNFIWRQAVLLEDGVLVDASWVLDILPPSDLHIMEQYELNHEEG*

Sequence

>CNT30381598
CTGGAGGTGCCTTTGTTTTACATTGATGCTCAAACCTCACTCAAAAACCATATATTGATGGTTACAAAAGCAAGAAACAGGACCCCTTTTCTTCCATAAT
GAATTTTAGTAGCCTCTTAGCGTTTGAACAATTGTGTTGTGCCATGGGTCTGAGAGGTGCTGCAAGAGGTTATCAAATGCTCCTTCTCCTTGGCCTCGAG
AGTTGGTGCAAAGTTGAGGGGGTTAAAAATACCACCAGGGTAACCAACTTCATTTGGAGGCAGGCTGTATTGCTTGAAGATGGGGTCTTGGTTGACGCTT
CCTGGGTTCTTGATATCTTGCCACCTTCTGATCTCCACATAATGGAACAATATGAACTCAATCACGAAGAGGGTTGATGATGATGCAAAGTACTCTTCTT
TGCCGGCATCATACCATTGAGGAACATTGATGACTCCGATCTTGGTGAAGACCTCTGGCAATAGCATCCCTGCTACACCTAACATAGCCCACCGCCCATT
CACAAGCTCCGCCTGGATGTACCATTTTAGGTTCTCGGGGTCCTCGGCGAGTCCAA