Detailed information on CNT30523309


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-88

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675792Setaria italicaSetaria viridis29.9750.36100351forward
CNT30487770Setaria italicaOlea europaea13.4935.0381.65158forward
CNT30554749Setaria italicaOryza glaberrima28.5219.2292.81334forward
CNT30138628Setaria italicaLolium perenne15.237.7997.19178forward
CNT30347972Setaria italicaEragrostis tef14.6921.1898.26172forward
CNT30596737Setaria italicaOryza meridionalis15.4629.7794.48181forward
CNT30102887Setaria italicaOryza rufipogon26.0536.492.13305forward
CNT30577292Setaria italicaOryza barthii19.2120.2795.11225forward
CNT30584554Setaria italicaEchinochloa crusgalli5.6430.795.4566forward

Expression of CNT30523309

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYVLLSPSAHQIGDHSPSTQPEKVWMMVLCHGSDRCCSRLSKGPLPVTLCWIRNPRNASMASLPA*

>peptide 2 (83 aa)
MNSMTNSVDDDAKYSDLPASYHCGALMSPALVSTSGISIPATPSIAHRPFTSSACTNHRRPSGSKPLSPGRLRQQSKHNNMST*

>peptide 3 (38 aa)
MVSKHLKLPADGDRVVTGSDATHRWRAPSPWPRAWARS*

>peptide 4 (40 aa)
MMCGSVSQLLSPPAEELALTCRRGRRGKGGRGATRPWPPP*

>peptide 5 (67 aa)
PPLSLMYIPITPQYSLSSPCIQHYYNTVLNLLSGLNTHHKLMIHTERNSHRSRINVCPPVPISPPNW*

>peptide 6 (29 aa)
TTLVINVHTNHPSVLTLLTMHTALLQHSP*

Sequence

>CNT30523309
ACCACCCTTGTCATTAATGTACATACCAATCACCCCTCAGTACTCACTCTCCTCACCATGCATACAGCATTATTACAACACAGTCCTTAATCTCCTCTCC
GGATTAAACACACATCACAAACTGATGATCCACACAGAAAGGAATTCACATCGATCGCGTATCAATGTATGTCCTCCTGTCCCCATCAGCCCACCAAATT
GGTGATCACTCCCCGTCGACTCAACCGGAGAAAGTCTGGATGATGGTGTTGTGCCATGGGTCGGACAGGTGCTGCAGCAGGTTGTCGAAGGGCCCCTTGC
CGGTGACGTTGTGCTGGATCAGGAACCCCAGGAACGCCAGCATGGCCAGCCTCCCTGCATGAACAGGCACATCACATCCGGATATGGTTAGTAAACATTT
AAAGTTGCCGGCGGACGGCGACCGTGTAGTCACGGGATCAGACGCTACTCACCGTTGGCGAGCTCCTTCTCCTTGGCCTCGAGCGTGGGCGCGAAGTTGA
GCGGGTTGAAGACGCTGCCGGGGTATCCGCACTCGTGGGGCGGCAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGACGCTGCCGGGGTTCTTGATGTC
CTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAACAGCGTGGACGACGACGCGAAGTACTCCGACTTGCCGGCGTCGTACCAC
TGCGGCGCGTTGATGAGCCCGGCCTTGGTCAGCACCTCCGGGATCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCA
CGAACCACCGCAGGCCCAGCGGGTCGAAACCATTGTCGCCCGGCAGGCTGCGACAGCAGTCAAAACACAACAACATGTCAACATGATGTGCGGGTCAGTT
AGTCAGCTGCTGTCGCCGCCGGCCGAAGAGCTAGCACTGACCTGCCGTCGAGGTAGGCGGGGGAAGGGAGGCCGGGGAGCCACTCGCCCTTGGCCTCCGC
CCTGAGGCTGCGCCTCGTCGGCGCAGCGGCGCGGCCGAGGCGGCTAGAGTGGCCGACGAAGGCCGACGACCTGAGCGACGCCGACGGGCGCAGGGCCGCG
ACCGGGGTGCGGGCGGTGACGGACGCCATGCTTCGCGGTGAGATGGGAGTGGCAGAGGAATGGAGAGGAAG