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Detailed information on CNT30224179


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695577Hordeum vulgareOryza sativa27.2511.3192.17115forward
CNT30675918Hordeum vulgareSetaria viridis28.4438.5991.67120forward
CNT30523687Hordeum vulgareSetaria italica28.4416.9791.67120forward
CNT30487770Hordeum vulgareOlea europaea21.0919.7383.1589forward
CNT30564637Hordeum vulgareActinidia chinensis20.387.5586.0586forward
CNT30554723Hordeum vulgareOryza glaberrima27.258.4292.17115forward
CNT30138628Hordeum vulgareLolium perenne20.3818.2610086forward
CNT30596737Hordeum vulgareOryza meridionalis21.815.1391.392forward
CNT30370946Hordeum vulgareOryza glumipatula27.259.392.17115forward
CNT30573808Hordeum vulgareVitis vinifera21.0913.9986.5289forward
CNT30102887Hordeum vulgareOryza rufipogon27.2513.7292.17115forward
CNT30577292Hordeum vulgareOryza barthii21.88.2992.3992forward
CNT30117373Hordeum vulgareOryza nivara27.257.3592.17115forward
CNT30604528Hordeum vulgareOryza punctata27.2510.0793.04115forward

Expression of CNT30224179

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MGESTRTKFHHRNFKITTRFCTATYSSTLCTSSAPQNNNSDHLKPPWSVKSTDLLAGDARVLDVLPPPDLDVVEEDELDDEERGGGGEVGLLAGVVPLG

Sequence

>CNT30224179
TGATTTAGTATTACTATCGTCATGGCGAATTCGATACTAATGCTTCAAACTAGTAGTATGTTTTGCCATGTTTTAAAATAACACGCATGGGTGATATTAC
AAGTACAGCCTCCGTCGGAAGCCATGGGCGAATCCACAAGGACAAAGTTTCACCACCGGAACTTTAAGATTACAACACGTTTTTGCACTGCCACCTACTC
CTCCACACTTTGTACATCCTCAGCACCCCAAAATAATAATTCAGACCACCTGAAACCTCCTTGGTCGGTGAAATCGACGGATTTATTGGCCGGAGATGCC
CGGGTTCTTGATGTCCTGCCACCGCCGGATCTCGACGTAGTGGAAGAGGATGAACTCGATGACGAAGAGCGTGGAGGAGGAGGCGAAGTAGGTCTCCTTG
CCGGCGTCGTACCACTCGGGCG