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Detailed information on CNT30205828


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Helianthus annuusOryza sativa22.349.2487.2186forward
CNT30675918Helianthus annuusSetaria viridis29.8736.9884.35115forward
CNT30523687Helianthus annuusSetaria italica29.8716.2784.35115forward
CNT30513114Helianthus annuusJuglans regia51.9569.283200forward
CNT30728535Helianthus annuusCorchorus capsularis55.0661.4583.96212forward
CNT30381598Helianthus annuusManihot esculenta54.0337.4182.69208forward
CNT30526306Helianthus annuusPhaseolus vulgaris23.129.588.7689forward
CNT30487770Helianthus annuusOlea europaea44.6838.1486.63172forward
CNT30708850Helianthus annuusGlycine max34.0316.5487.02131forward
CNT30300292Helianthus annuusTriticum aestivum18.4427.6388.7371forward
CNT30395365Helianthus annuusTriticum turgidum17.6624.9186.7668forward
CNT30564637Helianthus annuusActinidia chinensis31.6910.7187.7122forward
CNT3084615Helianthus annuusVigna radiata23.97.9791.392forward
CNT30554639Helianthus annuusOryza glaberrima22.3432.4587.2186forward
CNT30626732Helianthus annuusDaucus carota51.1715.7384.77197forward
CNT30596737Helianthus annuusOryza meridionalis22.3414.1486.0586forward
CNT30356968Helianthus annuusLactuca sativa75.0633.4183.74289forward
CNT30370946Helianthus annuusOryza glumipatula22.346.9587.2186forward
CNT30573808Helianthus annuusVitis vinifera67.5340.8882.69260forward
CNT30102823Helianthus annuusOryza rufipogon22.349.5687.2186forward
CNT30577292Helianthus annuusOryza barthii22.347.7587.2186forward
CNT30117373Helianthus annuusOryza nivara22.345.587.2186forward
CNT30604528Helianthus annuusOryza punctata22.347.5387.2186forward

Expression of CNT30205828

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PLASSFSLASAVGAKLSGLNMPPGYPTSFGGKL*

>peptide 2 (55 aa)
MNSITNRVDDDAKYSDFPASYHLGTFSIPMLVKTSGTWPENCNGSLCDGGHTFRW*

>peptide 3 (68 aa)
VGKLLLFGLSCGCKVKWVEYATRVPDFIWRQTVVFKYRILVNTSRVLDVLPSSDLDIVEQDELDHEQG*

Sequence

>CNT30205828
CCGTTGGCAAGCTCCTTCTCTTTGGCCTCAGCTGTGGGTGCAAAGTTAAGTGGGTTGAATATGCCACCCGGGTACCCGACTTCATTTGGAGGCAAACTGT
AGTTTTTAAATATCGGATCTTGGTTAACACTTCCCGGGTTCTTGATGTCTTGCCATCTTCTGATCTCGACATAGTGGAACAGGATGAACTCGATCACGAA
CAGGGTTGACGACGATGCGAAATATTCGGATTTTCCAGCGTCATACCACTTGGGGACATTCAGTATCCCCATGCTTGTGAAAACCTCAGGCACATGGCCG
GAAAACTGCAACGGAAGCTTGTGTGACGGCGGCCATACTTTCCGGTGGTAGTAAAAGGTGGAGGTGAAGGGGGGTTTGGAGGGAT