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Detailed information on CNT30144644


BLAST search results

BLAST vs Swiss-Prot:
sp|P27521|CA4_ARATH, E-value = 3e-87

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30270368Medicago truncatulaChenopodium quinoa63.8546.2782.64242forward
CNT30728535Medicago truncatulaCorchorus capsularis25.3327.8390.6296forward
CNT30381598Medicago truncatulaManihot esculenta92.6163.1383.19351forward
CNT30526306Medicago truncatulaPhaseolus vulgaris74.1429.9985.77281forward
CNT30487770Medicago truncatulaOlea europaea70.9859.6582.53269forward
CNT30708791Medicago truncatulaGlycine max78.6340.6585.57298forward
CNT3084615Medicago truncatulaVigna radiata75.7324.8786.41287forward
CNT30208094Medicago truncatulaHelianthus annuus36.1557.5684.67137forward
CNT30626732Medicago truncatulaDaucus carota87.626.5281.33332forward
CNT30358059Medicago truncatulaLactuca sativa75.732780.49287forward
CNT30414433Medicago truncatulaPapaver somniferum92.6128.3183.76351forward
CNT3038035Medicago truncatulaCucumis melo38.2629.4182.76145forward
CNT30723301Medicago truncatulaLupinus angustifolius69.3961.5982.89263forward

Expression of CNT30144644

Peptides detected in this lncRNA

>peptide 1 (57 aa)
WCKVQRVKNSTGVTNLTLWQTVLLEDRILVNATRVLNVLPSSNLDVMEQNELDHKEC*

>peptide 2 (54 aa)
MNSITKSVEDEAKYSSFPASYHFGTLMIPMLVKTSGSNIPATPNIAQRPFTSSA*

Sequence

>CNT30144644
TGGTGCAAAGTTCAAAGGGTTAAAAATTCCACCGGGGTAACCAACCTCACCCTTTGGCAAACTGTATTGCTTGAAGATAGGATCTTGGTTAACGCTACCA
GGGTTCTTAATGTCTTGCCATCTTCTAATCTCGACGTAATGGAACAAAATGAACTCGATCACAAAGAGTGTTGAAGATGAAGCAAAGTATTCTTCTTTCC
CTGCATCATACCATTTTGGAACGTTGATGATTCCAATGTTGGTGAAGACTTCAGGGAGTAACATCCCTGCAACACCTAACATAGCCCAACGTCCATTCAC
AAGCTCGGCTTGAACAAACCATTTCAAGTTCTCTGGATCCTCGGCTAGTCCCAATGGATCGAATCCGATCACCATGGAT