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Detailed information on CNT30728535


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Corchorus capsularisOryza sativa27.8310.3182.2996forward
CNT30513114Corchorus capsularisJuglans regia63.4875.7885.84219forward
CNT30375998Corchorus capsularisArabidopsis thaliana21.7422.2686.6775forward
CNT30270368Corchorus capsularisChenopodium quinoa24.9316.4487.2186forward
CNT30381598Corchorus capsularisManihot esculenta61.1637.9587.2211forward
CNT30526306Corchorus capsularisPhaseolus vulgaris55.3620.3884.82191forward
CNT30487770Corchorus capsularisOlea europaea32.7525.0685.84113forward
CNT30708773Corchorus capsularisGlycine max60.5833.2884.69209forward
CNT30564637Corchorus capsularisActinidia chinensis27.838.4387.596forward
CNT3084615Corchorus capsularisVigna radiata53.6216.0384.32185forward
CNT30554639Corchorus capsularisOryza glaberrima27.8336.2382.2996forward
CNT30171733Corchorus capsularisTrifolium pratense37.9718.7186.26131forward
CNT30144644Corchorus capsularisMedicago truncatula27.8325.3390.6296forward
CNT30605371Corchorus capsularisGossypium raimondii31.0142.1388.79107forward
CNT30205828Corchorus capsularisHelianthus annuus61.4555.0683.96212forward
CNT30626732Corchorus capsularisDaucus carota49.2813.5882.35170forward
CNT30478186Corchorus capsularisArabidopsis halleri2011.9688.4169forward
CNT30621375Corchorus capsularisCajanus cajan44.0629.882.24152forward
CNT30596737Corchorus capsularisOryza meridionalis27.8315.7982.2996forward
CNT30358059Corchorus capsularisLactuca sativa32.7510.6385.84113forward
CNT30370946Corchorus capsularisOryza glumipatula27.837.7682.2996forward
CNT30414433Corchorus capsularisPapaver somniferum31.018.6386.92107forward
CNT30573808Corchorus capsularisVitis vinifera55.3630.0381.68191forward
CNT3038035Corchorus capsularisCucumis melo36.8125.7685.04127forward
CNT30102823Corchorus capsularisOryza rufipogon27.8310.6782.2996forward
CNT30577292Corchorus capsularisOryza barthii27.838.6582.2996forward
CNT30604528Corchorus capsularisOryza punctata55.3616.7380.1191forward
CNT30723301Corchorus capsularisLupinus angustifolius34.4927.8781.51119forward

Expression of CNT30728535

Peptides detected in this lncRNA

>peptide 1 (68 aa)
ICKLLLLGLKGGSKVKWVENATRVTTFIWGQTVLLEDGILVHTAWVFNVLPPSDFHIVEQNELNHEKC*

>peptide 2 (45 aa)
MKMQKHPCNSQHSPSPIHKLGLHKPSQVLRILSKSQWVKPIVTWKT

Sequence

>CNT30728535
ATTTGCAAGCTCCTTCTCCTTGGCCTCAAGGGTGGGAGCAAAGTTAAGTGGGTTGAAAATGCCACCAGGGTAACCACATTCATTTGGGGGCAAACTGTAT
TGCTTGAAGATGGGATCTTGGTTCACACAGCCTGGGTTTTTAATGTCTTGCCACCTTCTGATTTCCACATAGTGGAACAAAATGAACTCAATCACGAAAA
GTGTTGATGAAGATGCAAAAGCATCCCTGCAACTCCCAACATAGCCCATCGCCCATTCACAAGCTCGGCTTGCACAAACCATCTCAAGTTCTCAGGATCC
TCAGCAAGTCCCAATGGGTCAAACCCATTGTCACCTGGAAGACTG